1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATCTGCTTTAAGAGAGGCATACAAGAACAAGAAGCTCTTGCCTCTTGATCTCCGTCCCAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAGgtctttacccgaattaccatttccaattatataatgttcttttgaattggatagcaaattagcaatcataataacttatggtgtttgtggtaacag
species | Arabidopsis thaliana |
transcript | AT5G02610.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCCGTAGACGTCTCACCAAGCATCAG GCTTCGTTGAAGACAGAGCGTGAGAAGAAGAAGGAGATGTATTTCCCAGTGEST: gi|163980122|gb|ES148389.1|ES148389
genomic: ATCCGTAGACGTCTCACCAAGCATCAGgtctttaccc ... gtggtaacagGCTTCGTTGAAGACAGAGCGTGAGAAGAAGAAGGAGATGTATTTCCCAGTG
EST: TCCGTCCCAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAG GCTTCGTTGAAGACAGAGCGTAGAGAAGAAGAAGGAGAEST: gi|164221965|gb|ES162911.1|ES162911
genomic: TCCGTCCCAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAGgtctttaccc ... gtggtaacagGCTTCGTTGAAGACAGAGCGT-GAGAAGAAGAAGGAGA
EST: TCCGTCCCAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAG GCTTCGTTGAAGACAGAGCGTGAGAAGAAGAAGGEST: gi|124967739|gb|EL041753.1|EL041753
genomic: TCCGTCCCAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAGgtctttaccc ... gtggtaacagGCTTCGTTGAAGACAGAGCGTGAGAAGAAGAAGG
EST: CAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAG GCTTCGTTGAAGACEST: gi|124924831|gb|EL002889.1|EL002889
genomic: CAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAGgtctttaccc ... gtggtaacagGCTTCGTTGAAGAC
EST: GTCCCAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAG GCTTCGTTGAAGACAGAGEST: gi|164163384|gb|ES130292.1|ES130292
genomic: GTCCCAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAGgtctttaccc ... gtggtaacagGCTTCGTTGAAGACAGAG
EST: CACCAAGCATCAG GCTTCGTTGAAGACAGAGCGTGAGAAGAAGAAGGAGATGTATTTCCCAGTGEST: gi|125188044|gb|EL202998.1|EL202998
genomic: CACCAAGCATCAGgtctttaccc ... gtggtaacagGCTTCGTTGAAGACAGAGCGTGAGAAGAAGAAGGAGATGTATTTCCCAGTG
EST: TCCGTCCCAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAG GCTTCGTTGAAGACAGAG
genomic: TCCGTCCCAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAGgtctttaccc ... gtggtaacagGCTTCGTTGAAGACAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGCTTTAAGAGAGGCATACAAGAACAAGAAGCTCTTGCCTCTTGATCTCCGTCCCAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAGgtctttacccgaattaccatttccaattatataatgttcttttgaattggatagcaaattagcaatcataataacttatggtgtttgtggtaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA