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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGTTTCGGAAGGATGACCTCTTGTATCCCTTAATCATGCTGCCTCCAAAGTCCATACCACCTTTCTGGCATGCCATTTTTATCATAGTGGTGAATGgtctgtactttctctcctatatttggtttcccttgctttaacgagtccactttcatcagctaacagttcatcagctatgcagtattcccaatatgattcgttgtagtatcctgttggatcatttggtgcttactcacttgtccctatattcctcag

Basic information

species Arabidopsis thaliana
transcript AT5G01960.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01960.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv08s0056g00440.t01 (Vitis vinifera), 5'ss of exon 3
TGGTGGTTTCGGAAGGATGACCTCTTGTATCCCTTAATCATGCTGCCTCCAAAGTCCATACCACCTTTCTGGCATGCCATTTTTATCATAGTGGTGAATGgtctgtactttctctcctatatttggtttcccttgctttaacgagtccactttcatcagctaacagttcatcagctat-gcagtattcccaatatgattcgttgtagtatcctgttggatcatttggtgcttactcacttgtccctatattcctcag
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TGGTGGTATCATAATGGTGATCTTTTATATCCTTTGATCATGCTGCCTCCAAAAGCTATTCCACCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGgtttgttcttttaccttattaatctgtctttttcatttcatacagtttacact-gtggtgtggtag--gaaaatctattgtagcaaatctcatctaacttgct------------------------------------------------------