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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCGGAAATATGCAAAGACTGAGAGAGTTTTGTTTCACTATAACGGGCATGGTGTCCCTAAACCTACACCTAATGGTGAAATCTGGGTTTACAATAAGgtcagttttctttcctttctctctacattgtccatgttcttagaagtctgttatcagccacctattcatcttgtgtgtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G01770.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 4
TTGCCGGAAATATGCAAAGACTGAGAGAGTTTTGTTTCACTATAACGGGCATGGTGTCCCTAAACCTACACCTAATGGTGAAATCTGGGTTTACAATAAGgtcagttttctttcctttctctctacattgt----ccatgttcttagaagtctgttatcagccacctattcatcttgtgtgtgcag-----------------
||| || |||||||||||| | || |||||||| || || || || ||||||||||| || ||||| ||  ||||||||||||| ||||| | ||||||||||| | ||| ||| |||   |      |||       |  | | | || ||  || |    | |   |||||| ||    || ||                 
TTGTCGTAAATATGCAAAGTCGGAAAGAGTTTTATTCCATTACAATGGGCATGGTGTGCCAAAACCAACTGCTAATGGTGAAATTTGGGTCTTCAATAAGgtcaatgttcattctttttagttcttgatgtgaggtagttatttgataaatcaattgttgttctc---ttcatcctggaaatgtagtactagttgacaaagaa

upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 4
TTGCCGGAAATATGCAAAGACTGAGAGAGTTTTGTTTCACTATAACGGGCATGGTGTCCCTAAACCTACACCTAATGGTGAAATCTGGGTTTACAATAAGgtcagttttctttccttt---ctctctac-attgtccatgttcttagaagtctgttatcagccacctattcatcttgtgtgtgcag-----------------
||| || |||||||||||| | || |||||||| || || || || ||||||||||| || ||||| ||  ||||||||||||| ||||| | ||||||||||  | ||| ||| |||    |||  |  |  |    |  | | | || ||  || |    |   | |||||| ||    || ||                 
TTGTCGTAAATATGCAAAGTCGGAAAGAGTTTTATTCCATTACAATGGGCATGGTGTGCCAAAACCAACTGCTAATGGTGAAATTTGGGTCTTCAATAAGgtcgatgttcattctttttagttcttgatgagaggtagttatttgataaatcaattgttgttc---ttttcatcctggcaatgtagtactagttgacaaagaa

upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 4
TTGCCGGAAATATGCAAAGACTGAGAGAGTTTTGTTTCACTATAACGGGCATGGTGTCCCTAAACCTACACCTAATGGTGAAATCTGGGTTTACAATAAGgtcagttttctttcctttctctctacattgtccatgttcttagaagtctgtt---atcagccacctattc-atcttgtgt----gtgcag
 || || |||||||| ||| ||||||||||||||||||||||||| || |||||||| || || || ||  ||||||||||||| ||| ||| ||||||||| | |||  |    |     ||| |  || | || || ||   |     ||   ||    | |||||||   || ||||    ||| ||
GTGTCGTAAATATGCCAAGTCTGAGAGAGTTTTGTTTCACTATAATGGACATGGTGTACCAAAGCCGACTGCTAATGGTGAAATTTGGCTTTTCAATAAGgt-attttattactttgaagttctgccgtg-ctattttattgatatcgcctttagatttttctcctattctgactggtgtattggtgaag

upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S124_156V6.1 (Physcomitrella patens), 5'ss of exon 4
TTGCCGGAAATATGCAAAGACTGAGAGAGTTTTGTTTCACTATAACGGGCATGGTGTCCCTAAACCTACACCTAATGGTGAAATCTGGGTTTACAATAAGgtcagttttc----tttcctttctctctacattgtccatgttc-ttagaagtctgttatcagccacctattcatcttgtgtgtgcag-------------
|||||| |||  ||| ||||  || || ||  ||||||| || ||||| |||||||| || | ||| ||| ||||||||||||||||||| | |||||||||   | ||     | |  ||   || ||  |||     |||  |||  ||  | | || |      ||     ||||    |  ||             
TTGCCGAAAAAGTGCGAAGAGCGAAAGGGTGCTGTTTCATTACAACGGCCATGGTGTACCAAGACCAACAGCTAATGGTGAAATCTGGGTGTTCAATAAGgtggatatttagcgtattgttgtactttagtttgatggagttggttaatagagtatgataatatcgttagaagccttgaacatcgaggtgtagtgtaaac

upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ28980 (Selaginella moellendorffii), 5'ss of exon 4
TTGCCGGAAATATGCAAAGACTGAGAGAGTTTTGTTTCACTATAACGGGCATGGTGTCCCTAAACCTACACCTAATGGTGAAATCTGGGTTTACAATAAGgtcagtttt-ctttcctttctctctacattgtccatgttcttagaagtctgttatcagccacctattcatcttgtgtgtgcag
 ||||||||| |||| ||| | || || || ||||||||||| |||||||||||||| |||||||| ||    ||||| ||  ||||| ||| ||| |||||  |  |  | |  || |  |||     ||      |   |  |  |||  | |||                          
GTGCCGGAAAAATGCGAAGTCGGACAGGGTCTTGTTTCACTACAACGGGCATGGTGTGCCTAAACCCACTGTCAATGGCGAGCTCTGGTTTTTCAACAAGgtaggcgtgacgtagctgttgctcctggctggttg-atggatgaagctcttctgtcacag-----------------------

upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ13684 (Selaginella moellendorffii), 5'ss of exon 3
TTGCCGGAAATATGCAAAGACTGAGAGAGTTTTGTTTCACTATAACGGGCATGGTGTCCCTAAACCTACACCTAATGGTGAAATCTGGGTTTACAATAAGgtcagtttt-ctttcctttctctctacattgtccatgttcttagaagtctgttatcagccacctattcatcttgtgtgtgcag
 ||||||||| |||| ||| | || || || ||||||||||| |||||||||||||| |||||||| ||    ||||| ||  ||||| ||| ||| |||||  |  |  | |  || |  |||     ||      |   |  |  |||  | |||                          
GTGCCGGAAAAATGCGAAGTCGGACAGGGTCTTGTTTCACTACAACGGGCATGGTGTGCCTAAACCCACTGTCAATGGCGAGCTCTGGTTTTTCAACAAGgtaggcgtggcgtagctgttgctcctggctggttg-atggatgaagctcttctgtcacag-----------------------