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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAGCTAATGCTGCGTCTGAAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCGTTGGGTCAGTGCTCTTCACGgtatgtacatctctctattaggtgttttgtgttaaaagtttcacctcattgtcttggaaggcatataatctttctcatattaaggcttggttgtgttctcttgcagttaaaagacttttggtagctgtgattttttgctttcctctaaagattctgagaaactcttttatctcaaatgttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G01460.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 4
TACAGCTAATGCTGCGTCTGAAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCGTTGGGTCAGTGCTCTTCACGgtatgtacatctctctattaggtgttttgtgttaaaagtttcacctcattgtcttggaaggcatataatctttctcatattaaggcttggttgtgttctcttgcagttaaaagacttttggtagctgtgattttttgctttcctctaaagattctgagaaactcttttatctcaaatgttgtag
 || ||   ||||   ||| |||  || ||| | |||||  |||| || || |||||||| |||||||||||||| |||||||| || || |||||||| ||  ||    ||      |   |||||||  |||  |   |  |   || |          ||| || ||  |||  |     ||  ||  ||||  |  |   || |  | | |                                                                     
CACTGCACCTGCTAACTCTCAAACAACTTGGACAATGCGCGCTACCTTCCCTGAATATGTGGTTGCTCTTGCTACCATCGTTGGATCTGTTCTCTTCACAgtgagttttacttcaatcttcatgttttgctttatcaccgtttctgtatagct-------acatctattcactctact-----ggtctgcatgtgaccgat---agctttatgtc---------------------------------------------------------------------

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 4
TACAGCTAATGCTGCGTCTGAAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCGTTGGGTCAGTGCTCTTCACGgtatgtacatctctctattaggtgttttgtgttaaaagtttca-cctcattgtcttggaaggcatataatctttctcatattaaggcttggttgtgttctcttgcagttaaaagacttttggtagctgtgattttttgctttcctctaaagattctgagaaactcttttatctcaaatgttgtag
  | |||| | || | || || || |||||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || ||||| ||| | ||| |  ||| |||  || |  |   ||   | |   ||||||   |   ||  |   |      |||   |||   |  |    | ||     | || | |||                                                                                 
CTCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTGTTGCACTTGCTACAATTGTTGGATCTGTGCTTTTCGCTgtaagctcat-tcttcataaaat---ttaattcacctgtttcaattttcctgcttcatatttggcataggtttttagacttgtttggttaacattattgttttg---------------------------------------------------------------------------------

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 4
TACAGCTAATGCTGCGTCTGAAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCGTTGGGTCAGTGCTCTTCACGgtatgtacatctctctattaggtgttttgtgttaaaagtttca-cctcattg--tcttggaaggcatataatctttctcatattaaggcttggttgtgttctcttgcagttaaaagacttttggtagctgtgattttttgctttcctctaaagattctgagaaactcttttatctcaaatgttgtag
  | |||| | || | || || || |||||| ||||||||||||| |||||||||||||||||||| |||||||| || ||||| || ||||| ||  | ||| |  ||| |||  || |  |   ||   ||||  ||||||   |   ||  ||||    ||||||   | ||   | | ||  |      || |  | | |                                                                                   
CTCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTGTTGCACTTGCTACTATTGTTGGATCTGTGCTTTTTGCTgtaagctcat-tcttcataaaat---ttaatttaactgtttcaattttcctgcttcttatttggcataggtttttaggcttgtttggttaacattattgttttt-----------------------------------------------------------------------------------

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 4
TACAGCTAATGCTGCGTCTGAAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCGTTGGGTCAGTGCTCTTCACGgtatgtacatctctctattaggtgttttgtgttaaaagtttcacctcattgtcttggaaggcatataatctttctcatattaaggcttggttgtgttctcttgcagttaaaagacttttggtagctgtgattttttgctttcctctaaagattctgagaaactcttttatctcaaatgttgtag
 || || | | || | || || || |||||| ||||||||||||| |||||||||||||||||||||||||| || || ||||| || ||||| ||  | ||| ||  |||    |||   || |  ||  |    ||||| |     || |||         ||  |  ||  |   |||     ||  || | ||  ||||     |||     | ||                                                                
CACTGCCAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTGTTGCTCTTGCCACTATTGTTGGATCTGTGCTTTTTGCTgtaagttaatcg---tatatcgtatgctgcctaggtagttt-atgggtttatct--------gtactactttctttcaatt-----ttcattttttttccttgtg---aaagtgtgtgtg----------------------------------------------------------------

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 4
TACAGCTAATGCTGCGTCTGAAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCGTTGGGTCAGTGCTCTTCACGgtatgtacatctctctattaggtgttttgt------gttaaaagtttcacctc-attgtcttggaaggcatataatctttct-catattaaggcttggttgtgttctcttgcagttaaaagacttttggtagctgtgattttttgctttcctctaaagattctgagaaactcttttatctcaaatgttgtag
 || || | | || | || ||||| |||||| ||||||||||||| ||||| |||||||| ||||||||||| || || ||||| || ||||| ||  | ||| ||  ||| || |||    || |   |      ||| |  | || | ||| | |   ||        ||| || ||| | | | | || |  ||  ||                                                                                           
CACTGCCAGTCCTTCATCAGAAAAAACATGGACCATGCGTACTACCTTTCCTGAATATGTCGTTGCTCTTGCCACTATTGTTGGATCTGTGCTTTTTGCTgtaagttaatc-ctatatcgtatgctgcctagggtagtttatggatttatctctactactttctttcaattatcattttttttcttgtgaaagtgtgtgtg-------------------------------------------------------------------------------------------

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 3
TACAGCTAATGCTGCGTCTGAAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTT-GTTGCTCTTGCTACAATCGTTGGGTCAGTGCTCTTCACGgtatgtacatctctctattaggtgttttgtgttaaaagtttca-cctcattg--tcttggaaggcatataatctttctcatattaaggcttggttgtgttctcttgcagttaaaagacttttggtagctgtgattttttgctttcctctaaagattctgagaaactcttttatctcaaatgttgtag
  | |||| | || | || || || |||||| ||||||||||||| ||||||||||||||| ||||| |||||||| || ||||| || ||||| ||  | ||| |  ||| |||  || |  |   ||   |||   ||||||   |   ||  ||||    ||||||   | ||   | | ||  |  ||     | || | |||                                                                                 
-TCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTTGTTGCACTTGCTACTATTGTTGGATCTGTGCTTTTTGCTgtaagctcat-tcttcataaaat---ttaatttacctgtttcaattttcctgcttcttatttggcataggtttttaggcttgtttgg--ttaacattattgttttg---------------------------------------------------------------------------------

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 4
TACAGCTAATGCTGCGTCTGAAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCGTTGGGTCAGTGCTCTTCACGgtatgtacatctctctattaggt--gttttgtgttaaaagtttcacctcattgtcttggaaggcatataatctttctcatattaaggcttggttgtgttctcttgcagttaaaagacttttggtagctgtgattttttgctttcctctaaagattctgagaaactcttttatctcaaatgttgtag
| | || | |||| | ||||| || |||||| | ||||| ||||| ||||||||||||||||||||||||||||| || || || || || || ||| | |||||| |||  ||  |     |   |  | | || || |||     | | |  ||||  |  | ||   |   | | | ||  |   ||   |||| | |                                                                                     
TTCTGCAAGTGCTTCATCTGAGAAAACATGGACTATGCGCACTACTTTTCCAGAATATGTTGTTGCTCTTGCTACCATTGTCGGATCTGTACTTTTCTCTgtatgttcattcctgcaaacctttaatcctttatttaatgttctgagttact--cttgttacacttaccttaaatgt-agatacaattttaaatgtggtattc-----------------------------------------------------------------------------------