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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGTCATTGATGACCGTATGAAGGTTTGGGAGGACAAGGATCAACCACGGGTTCATGTTGTTTCTGCATATCTTCCTTATTATGCTCCACAAGCAGAGgcatgtggttgctcttgcatttagttgtgaattaaattctgtatcacttaattttccaagtgggtatctaaccattttcgtatgcccatttatcag

Basic information

species Arabidopsis thaliana
transcript AT5G01270.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01270.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os01g63820.1 (Oryza sativa), 5'ss of exon 4
AATGGTCATTGATGACCGTATGAAGGTTTGGGAGGACAAGGATCAACCACGGGTTCATGTTGTTTCTGCATATCTTCCTTATTATGCTCCACAAGCAGAGgcatgtggttgctcttgcatttagttgtgaattaaattctgtatcacttaattttccaagtgggtatctaaccattttcgtatgcccatttatcag
 ||||| |||||||||||  || |||||||||| || ||||||||||| || |||||||||||  | ||||||  ||| |||||||| |||||||| |||| || |        ||| ||||  |||   |     || |   |||   ||| |  ||    ||   ||     ||| | |||             
CATGGTAATTGATGACCGACTGCAGGTTTGGGATGAGAAGGATCAACCTCGAGTTCATGTTGTCCCAGCATATACTCCATATTATGCCCCACAAGCTGAGgtattta------tttgtattttattgcttacactttttttggtcaac-aatatctcattctggaccctg----tttgcatattttag--------

upper sequence: AT5G01270.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G42790.1 (Glycine max), 5'ss of exon 4
AATGGTCATTGATGACCGTATGAAGGTTTGGGAGGACAAGGATCAACCACGGGTTCATGTTGTTTCTGCATATCTTCCTTATTATGCTCCACAAGCAGAGgcatgtggttgctcttgcatttagttgtgaattaaattctgtatcacttaattttccaagtgggtatctaaccattttcgtatgcccatttatcag
 ||||| |||||||| ||    ||||||||||| |||||||| || ||  |||||||||||||  |||| | |  ||||||||||||||| ||||||||||  || | ||     || || |   ||    ||  | | | | |  || ||| |||    | |  |    |  || ||| | |    |||      
-ATGGTGATTGATGATCGGTCAAAGGTTTGGGAAGACAAGGACCAGCCTAGGGTTCATGTTGTGCCTGCCTTTACTCCTTATTATGCTCCTCAAGCAGAGGtgtgggttta----tgtatattactgcattttttaatttttttttctaaatattcatgatagagacactaatatattcttttctttattaga---