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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAAGGTTCCACTCTCGCTTGCGCTTAGTCCAAGAATCATCTCTGAAATTGCACGGTTTAAGCCTGACATTATACACGCTTCATCTCCCGGAGTTATGgtaaatccctcaagaattcacattactaaaacattagcaagaccagtgaactggagagaatccagaacttgactctcttttttccctgactaaaatttttag

Basic information

species Arabidopsis thaliana
transcript AT5G01220.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116409173|gb|EG451765.1|EG451765
EST:     TTGCACGGTTTAAGCCTGACATTATACGCGCTTCATCTCCCGGAGTTATG                         GTCTTTGGTGCTCTGGCAATAGCAAAAATGCTATCTGTACCAATAGTAATG
genomic: TTGCACGGTTTAAGCCTGACATTATACACGCTTCATCTCCCGGAGTTATGgtaaatccct ... aaatttttagGTCTTTGGTGCTCTGGCAATAGCAAAAATGCTATCTGTACCAATAGTAATG
EST: gi|116431123|gb|EG473715.1|EG473715
EST:     CATCTCCCGGAGTTATG                         GTCTTTGGTGCTCTGGCAATAGCAAAAATGCTATCTGTACCAATAGTAATG
genomic: CATCTCCCGGAGTTATGgtaaatccct ... aaatttttagGTCTTTGGTGCTCTGGCAATAGCAAAAATGCTATCTGTACCAATAGTAATG
EST: gi|86057508|gb|DR353265.1|DR353265
EST:     TTGCACGGTTTAAGCCTGACATTATACACGCTTCATCTCCCGGAGTTATG                         GTCTTTGGTGCTCTGGCAATAGCAAAAATGCTATCTGTACCAATAGTAATG
genomic: TTGCACGGTTTAAGCCTGACATTATACACGCTTCATCTCCCGGAGTTATGgtaaatccct ... aaatttttagGTCTTTGGTGCTCTGGCAATAGCAAAAATGCTATCTGTACCAATAGTAATG
EST: gi|116409166|gb|EG451758.1|EG451758
EST:     TTGCACGGTTTAAGCCTGACATTATACGCGCTTCATCTCCCGGAGTTATG                         GTCTTTGGTGCTCTGGCAATAGCAAAAATGCTATCTGTACCAATAGTAATG
genomic: TTGCACGGTTTAAGCCTGACATTATACACGCTTCATCTCCCGGAGTTATGgtaaatccct ... aaatttttagGTCTTTGGTGCTCTGGCAATAGCAAAAATGCTATCTGTACCAATAGTAATG
EST: gi|116409154|gb|EG451746.1|EG451746
EST:     TTGCACGGTTTAAGCCTGACATTATACGCGCTTCATCTCCCGGAGTTATG                         GTCTTTGGTGCTCTGGCAATAGCAAAAATGCGATCTGTACCAATAGTAATG
genomic: TTGCACGGTTTAAGCCTGACATTATACACGCTTCATCTCCCGGAGTTATGgtaaatccct ... aaatttttagGTCTTTGGTGCTCTGGCAATAGCAAAAATGCTATCTGTACCAATAGTAATG
EST: gi|116409155|gb|EG451747.1|EG451747
EST:     TTGCACGGTTTAAGCCTGACATTATACGCGCTTCATCTCCCGGAGTTATG                         GTCTTTGGTGCTCTGGCAATAGCAAAAATGCGATCTGTACCAATAGTAATG
genomic: TTGCACGGTTTAAGCCTGACATTATACACGCTTCATCTCCCGGAGTTATGgtaaatccct ... aaatttttagGTCTTTGGTGCTCTGGCAATAGCAAAAATGCTATCTGTACCAATAGTAATG