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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATACCTCGAAATGGATTGAGGATGTTCACAGAGAAAGAGGTCAAAGCAATGTTATCATCGTTCTTGTTGGAAACAAAACTGATCTTGTTGAAAAACGgtaaatacaaacattaagcaaagaattggatgggatggactatataattctctcttgtcttatatatgtcaatcttgatataatgaaaaacag

Basic information

species Arabidopsis thaliana
transcript AT4G39890.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G39890.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G14390.1 (Glycine max), 5'ss of exon 4
---TGAATACCTCGAAATGGATTGAGGATGTTCACAGAGAAAGAGGTCAAAGCAATGTTATCATCGTTCTTGTTGGAAACAAAACTGATCTTGTTGAAAAACGgtaaatacaaacattaagcaaagaattggatgggatg---gactatataattctctcttgtcttat-atatgtcaatcttgatataatgaaaaacag---
   |||| ||    || ||| ||||||| ||||  | |||| | ||    ||  ||||||| || ||  | |||||||||||||||||||||||||||||| ||| | ||| ||  |     | |  |||   |    |     |  ||  ||||||    ||| || | |   |  | | ||  | |  ||||         
TTCTGAACACTAACAAGTGGGTTGAGGAGGTTCGTACAGAACGTGGC---AGTGATGTTATTATTGTGTTGGTTGGAAACAAAACTGATCTTGTTGAAAAAAGgtgagtactaatttggtctatatgattctttaatttataaaaaaattaaattcttaactgttttgttaagcggaagttttagtgttttgaaccttctatt

upper sequence: AT4G39890.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S346_29V6.1 (Physcomitrella patens), 5'ss of exon 5
---TGAATACCTCGAAATGGATTGAGGATGTTCACAGAGAAAGAGGTCAAAGCAATGTTATCATCGTTCTTGTTGGAAACAAAACTGATCTTGTTGAAAAACGgtaaatacaaac-attaagcaaagaattggatgg-gatggactatat----aattctctcttgtcttatatatgtcaatc------ttgatataatgaaaaacag--------------------------------------------------
   | ||||| ||   ||||||||| || || |  | |||  | ||   |||  ||||||||||  | |||||||| ||||| |||||||||||||| || |||||| ||    |   ||     |        | | | | |  ||| |      | |  |  |  ||| ||| ||  ||||       || |    |||  || |                                                   
TTCTAAATACATCTCGATGGATTGAAGAGGTCCTAACAGAGCGTGG---AAGTGATGTTATCATAATGCTTGTTGGCAACAAGACTGATCTTGTTGATAAGCGgtaagtatcttctgctatttttatttcctagtagtggttggttattttttcggtccaatgattacttgtatctgcaaatcatctttctgttgaggtgaggaatattgtaacgtgcaatttggtttattatttaattgttcttgacattttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437617|gb|EG480209.1|EG480209
EST:     AATGTTATCATCGTTCTTGTTGGAAACAAAACTGATCTTGTTGAAAAACG                         GCAAGTATCAATCAGTGAGGGAGAAGACAAGGGTAAAGAGTATGGAGTGAT
genomic: AATGTTATCATCGTTCTTGTTGGAAACAAAACTGATCTTGTTGAAAAACGgtaaatacaa ... tgaaaaacagGCAAGTATCAATCAGTGAAGGAGAAGACAAGGGTAAAGAGTATGGAGTGAT