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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaactttaaatctctgttagacattcttttaactgtatgcaattagctactgtactactttggttaaaaaaagtgttgacctttagttcctaaactagtttgatcttatgatgtaggcag

Basic information

species Arabidopsis thaliana
transcript AT4G39460.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G39460.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G169914_T03 (Zea mays), 5'ss of exon 2
AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaactttaaatctctgttagacattcttttaactgtatgcaattagctactgtactactttggttaaaaaaagtgttgacctttagttcctaaactagtttgatcttatgatgtaggcag
|||||    | || |||||  | ||||| ||||| ||||||||||||||||| || |||||||| || ||||| || ||||||| | |   |     |||| || |   |    ||  |  ||     | |  |  |   ||   | | ||  |  ||    ||  |||| |   |  | | | |   || |                     
AGGGGGCCTTGGCTGGAGGAGCTGCTGGTGTTGTTGTTGAAACAGCTTTATATCCTATTGATACAATAAAGACCAGGCTTCAGgtaagctgat----tttacatttgaatgcagcaccccgtt-----tgtctagct---tatcatgcaaccatcattctccaagttgttcattctcggatgc-atggtaatacac-----------------

upper sequence: AT4G39460.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G31870.1 (Glycine max), 5'ss of exon 4
AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaactttaaatctctgttagacattcttttaactgtatgcaattagctactgtactactttggttaaaaaaagtgttgacctttagttcctaaactagtttgatcttatgatgtaggcag
||||  |||| ||||||||||||||||||||||| ||||||||||||||||||||||| || || || || ||  | || |||||||||    |      |||| | |  |  | |||     ||  || ||   || |||  |||| |    || |||         ||||   | |  || | ||    | ||||                
AGGGCGTTATTGCAGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATCGACACAATAAAAACACGTCTGCAGgcaggtttttgtgacaaaaat-tgtaatgaagatt-----aagggt-tgtgctttgctg-tgtattttactgattactgt-----ttgatgctgaaatcttgaa----tatgatgcc-------------

upper sequence: AT4G39460.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G15150.1 (Glycine max), 5'ss of exon 3
AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaactttaaatctctgttagacattcttttaactgtatgcaattagctactgtactactttggttaaaaaaagtgttgacctttagttcctaaactagtttgatcttatgatgtaggcag
||||  |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| || || || ||  | || |||||||||           ||| || |  |  | |||     ||  || ||   || |||  |||| ||   || |||         ||||   | |  || | ||    | ||||                
AGGGCGTTATTGCAGGTGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATTGACACAATAAAAACACGTCTGCAGgcaggtttttatgacaaaaa-ctgtaatgaagatt-----aagggt-tgtgctttgctg-tgtattatactgattactgt-----ttgatgctgaaatcttgaa----tatgatgcc-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125163617|gb|EL190387.1|EL190387
EST:     AAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAG                         CTCGTGGAGGTGGAAAAATTGTTT-GAAGGGTCTTTATTCAGGAT
genomic: AAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaac ... atgtaggcagCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGAT
EST: gi|86037549|gb|DR333304.1|DR333304
EST:     TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAG                         CTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
genomic: TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaac ... atgtaggcagCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
EST: gi|86037541|gb|DR333296.1|DR333296
EST:     TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAG                         CTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
genomic: TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaac ... atgtaggcagCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
EST: gi|86037552|gb|DR333307.1|DR333307
EST:     TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAG                         CTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATT
genomic: TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaac ... atgtaggcagCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATT
EST: gi|86037540|gb|DR333295.1|DR333295
EST:     TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAG                         CTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
genomic: TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaac ... atgtaggcagCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
EST: gi|86037532|gb|DR333287.1|DR333287
EST:     TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAG                         CTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
genomic: TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaac ... atgtaggcagCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
EST: gi|86037555|gb|DR333310.1|DR333310
EST:     TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAG                         CTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
genomic: TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaac ... atgtaggcagCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
EST: gi|125274718|gb|EL288803.1|EL288803
EST:     AAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAG                         CTCGTGGAGGTAGGAAAAATTGTTTTGAAGGGTC
genomic: AAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaac ... atgtaggcagCTCGTGGAGGT-GGAAAAATTGTTTTGAAGGGTC
EST: gi|86037534|gb|DR333289.1|DR333289
EST:     TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTT----CAG                         CTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
genomic: TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaac ... atgtaggcagCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
EST: gi|86037548|gb|DR333303.1|DR333303
EST:     TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAG                         CTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
genomic: TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaac ... atgtaggcagCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
EST: gi|152033833|gb|BP817226.2|BP817226
EST:     GAAACAGCTTTATACCCAACTTGATACTATTAAGACTAGACTTCAGGCAG                         CTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
genomic: GAAACAGCTTTATACCCAA-TTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaac ... atgtaggcagCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
EST: gi|86037553|gb|DR333308.1|DR333308
EST:     TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAG                         CTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG
genomic: TGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaac ... atgtaggcagCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTG