1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAAGCTGAGACAGGAGGAGAATGTTCATAGAGCATTGGAGAGAGCTTTTACTAGACCTTTAGGAGCTTTACCTCGTCTTCCGTCTTACCTCCCTCGACATgtaagatccgaatgctggattctcgacttttgtatttcgaacttgttgttctttgtgttttaatatttgtttctgtttttgggttttgataag
species | Arabidopsis thaliana |
transcript | AT4G37080.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACCTCCCTCGACAT ACATTGGAGCTTCTTTGCTGAAGTAGCTGTTCTTGAAGAGGAAGTGGTTCGEST: gi|124921533|gb|EH995141.1|EH995141
genomic: ACCTCCCTCGACATgtaagatccg ... ttttgataagACATTGGAGCTTC-TTGCTGAAGTAGCTGTTCTTGAAGAGGAAGTGGTTCG
EST: ACCTCCCTCGACAT ACATTGGAGCTTCTTTGCTGAAGTAGCTGTTCTTTGAAGAGGAAGTGGTTC
genomic: ACCTCCCTCGACATgtaagatccg ... ttttgataagACATTGGAGCTTC-TTGCTGAAGTAGCTGTTC-TTGAAGAGGAAGTGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCTGAGACAGGAGGAGAATGTTCATAGAGCATTGGAGAGAGCTTTTACTAGACCTTTAGGAGCTTTACCTCGTCTTCCGTCTTACCTCCCTCGACATgtaagatccgaatgctggattctcgacttttgtatttcgaacttgttgttctttgtgttttaatatttgtttctgtttttgggttttgataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT