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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCAAGTAGCACATGAAGGTGAGACCGGAAAAGCTTCAAGAGCTAGTTTTCATGATCGACAAGGTAGAGTAGTGCTTATAATGAGACCAGCCATGCAGgtaactaagcccattgtcacctttatgaatatttttcttgagttttttttaaaaatgatatctcacttaataaaaatgaaacag

Basic information

species Arabidopsis thaliana
transcript AT4G36640.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36640.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G25460.1 (Glycine max), 5'ss of exon 4
AATCAAGTAGCACATGAAGGTGAGACCGGAAAAGCTTCAAGAGCTAGTTTTCATGATCGACAAGGTAGAGTAGTGCTTATAATGAGACCAGCCATGCAGgtaactaagcccattgtcacctttatgaatatttttcttgagttttttttaaaaatgatatctcacttaataaaaatgaaacag----
  | || |||||||||| |||||||| || ||||  || |||||||  |||||||||||||| || || |  |||||||| ||||| ||||  ||||||||   | | |        || || |  ||   || |||  |  |   |    || | | ||||    ||||     |      |    
GCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAGgt--ttgaactagaatgtactttcaataaggcttctctgtacatgactggttaacttaaatct-gtctaatctgtttccttttgttag