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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTGAAAAACTTCAACAAGGCTGCTAGAGACTTGATTACTCGTCTTCAAAAGGTCGATGGTGACAACTATCCTGAGgtgtgatttatatctctgcatgctcaattcttttccactggtctatgaaccagtagtttaactttgtaacgactttggatcag

Basic information

species Arabidopsis thaliana
transcript AT4G36490.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G12270.1 (Glycine max), 5'ss of exon 4
GGACTGAAAAACTTCAACAAGGCTGCTAGAGACTTGATTACTCGTCTTCAAAAGGTCGATGGTGACAACTATCCTGAGgtgtgatttatatctctgcatgctcaattcttttccactggtctatgaaccagtagtttaactttgtaacgactttggatcag
|| || ||||  || ||||| ||||| || ||  | ||    |||||||| ||| | |||||||||||||||||||||||      ||    |   |||   | || ||      ||     || | ||  |  || ||||||        |||| |    
GGTCTCAAAAGTTTGAACAAAGCTGCAAGGGATCTCATCCAGCGTCTTCAGAAGATTGATGGTGACAACTATCCTGAGgtacttactactcattcacattggccat-ctccctagctcac--attagcc--tgattgaacttttct----ttttgcag---