1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTATCTTTCAGCATCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAGgtaagtacatacaaacacaatgactcactctgtttcaaagtccaatgacaagacccttctatgtgttcttttgattatgcag
species | Arabidopsis thaliana |
transcript | AT4G36410.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAG ATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTCEST: gi|86046992|gb|DR342747.1|DR342747
genomic: TCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAGgtaagtacat ... gattatgcagATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTC
EST: TCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAG ATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTCEST: gi|124726159|gb|EH817561.1|EH817561
genomic: TCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAGgtaagtacat ... gattatgcagATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTC
EST: CCTCATATTTACAGCAACGGTCACATTTGTTTAG ATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTCEST: gi|86046995|gb|DR342750.1|DR342750
genomic: CCTCATATTTACAGCAACGGTCACATTTGTTTAGgtaagtacat ... gattatgcagATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTC
EST: TCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAG ATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTCEST: gi|86081006|gb|DR376763.1|DR376763
genomic: TCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAGgtaagtacat ... gattatgcagATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTC
EST: TCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAG ATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTCEST: gi|86046993|gb|DR342748.1|DR342748
genomic: TCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAGgtaagtacat ... gattatgcagATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTC
EST: TCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCASATTTGTTTAG ATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTCEST: gi|86046996|gb|DR342751.1|DR342751
genomic: TCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAGgtaagtacat ... gattatgcagATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTC
EST: TCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAG ATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTCEST: gi|124858693|gb|EH943130.1|EH943130
genomic: TCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAGgtaagtacat ... gattatgcagATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTC
EST: TATTTACAGCAACGGTCACATTTGTTTAG ATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTC
genomic: TATTTACAGCAACGGTCACATTTGTTTAGgtaagtacat ... gattatgcagATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATCTTTCAGCATCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAGgtaagtacatacaaacacaatgactcactctgtttcaaagtccaatgacaagacccttctatgtgttcttttgattatgcag
- - - - - - - - CAGCTC