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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGGTTCCGGCTTAAGTTCCCTCATTTGACCTGTGGAAGCCTCGCTAGTTCAGCAGTTGTTCGTGCTGTCTACGAATTCCCCGAATTTGATCAACAGgtattcgttacaatattcaactttaagtgaagaaatgttgtgtttcttcatatagagtttagttgctgacagaatcgagatttttataccttattgaatag

Basic information

species Arabidopsis thaliana
transcript AT4G36190.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36190.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os10g36760.1 (Oryza sativa), 5'ss of exon 4
TGCTTGGTTCCGGCTTAAGTTCCCTCATTTGACCTGTGGAAGCCTCGCTAGTTCAGCAGTTGTTCGTGCTGTCTACGAATTCCCCGAATTTGATCAACAGgtattcgttacaa-tattcaactttaa--gtgaagaaatgttgt-gtttcttcatatagagtttagttgctgacagaatcgagatttttataccttattgaatag
|||||||||| |  | ||||||||||| ||||| |||||||| || || ||||||| |||||||| | |||| ||| | |   | || |||||  ||||||||     ||||  |    | | ||||   ||    |||||| | |  | ||   ||  |  | |       ||      |     || | | ||   ||||   
TGCTTGGTTCAGATTGAAGTTCCCTCACTTGACATGTGGAAGTCTTGCGAGTTCAGGAGTTGTTCTTTCTGTTTACAACTATACTGACTTTGACAAACAGgta---actacaggtgcagatccttaatcatgttataatgttatcgcattttggcatgcacctaaaagttctacctttctgcatgattcacatctc--tgaag--

upper sequence: AT4G36190.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os10g36780.1 (Oryza sativa), 5'ss of exon 4
TGCTTGGTTCCGGCTTAAGTTCCCTCATTTGACCTGTGGAAGCCTCGCTAGTTCAGCAGTTGTTCGTGCTGTCTACGAATTCCCCGAATTTGATCAACAGgt-attcgttacaatattcaactttaagtgaagaaatgttgtgtttcttcatatagagtttagttgctgacagaatcgagatttttatacc----ttattgaatag----------------------------------------------------
||| |||||| |||| ||||||||||| ||||| ||||||||||| || || ||||  || || | |||||| ||| | ||| | || |||||  | ||||| |    |||  || |   | |  |  |  |  | || | ||       | |  ||   | ||   | |   | ||  |||  || || |     |  ||    |                                                    
TGCATGGTTCAGGCTCAAGTTCCCTCACTTGACATGTGGAAGCCTTGCGAGCTCAGGGGTGGTGCTTGCTGTGTACAATTTCACTGACTTTGACAAGCAGgttaggaattatgatttaggagtacagtttcaccagtgctatgg------acaaggatcatggtgagtcatgaactcatgatccttgtatccatgctgctgttctgtgtaatccactttggatctgatgaaattttttgtatggctaccattgtgtag

upper sequence: AT4G36190.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G031572_T01 (Zea mays), 5'ss of exon 4
TGCTTGGTTCCGGCTTAAGTTCCCTCATTTGACCTGTGGAAGCCTCGCTAGTTCAGCAGTTGTTCGTGCTGTCTACGAATTCCCCGAATTTGATCAACAGgtattcgttacaata--ttcaactttaagtgaagaaatgttgtgtttcttcatatagagtttagttgctgacagaatcgagatttttataccttat---tgaatag
|||||||||| || | ||||| ||||| ||||| ||||||||||| || |||||||  ||||||| |||||| ||| | ||  |||| |||||  ||||||| |  |    |  |  |     ||||  |    ||   |   |  |     | || |  | |  | ||||     |     | | |||   |||    |   |||
TGCTTGGTTCAGGTTGAAGTTTCCTCACTTGACATGTGGAAGCCTTGCAAGTTCAGGGGTTGTTCTTGCTGTATACAACTTTACCGATTTTGACAAACAGgtttgtgcaggagcagatcttgatttatttattaaacattaaagcattcaagtctacacctgaactcctgaagttctacttctgtgtatgatttacatctctgtag

upper sequence: AT4G36190.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G24290.1 (Glycine max), 5'ss of exon 4
TGCTTGGTTCCGGCTTAAGTTCCCTCATTTGACCTGTGGAAGCCTCGCTAGTTCAGCAGTTGTTCGTGCTGTCTACGAATTCCCCGAATTTGATCAACAGgta-------------ttcgttacaatattcaac---------tttaagtgaagaaatgttgtgtttct----tcatatagagtttagttgctgacagaatcgagatttttataccttattgaatag------
||| |||||||| |||||||| || ||||| || |||||||| || |||||||| |||||||||| |||||| ||  | | | | ||||||||||| |||||              ||  || | ||  ||| |         |||| |  ||    | |   |||||     |    |    |||| || |   || | |  |  || | |    |||||    |       
TGCATGGTTCCGTCTTAAGTTTCCCCATTTAACATGTGGAAGTCTGGCTAGTTCTGCAGTTGTTCTTGCTGTTTATAACTACACAGAATTTGATCAGCAGgtgaagatagttcttttttctttccatggtcatcatttgtttctttaggctaaatgctataaagtttccaaaattccctcctatttaatttccatcaaattttaagttctca-gttttatttttcatgtgcag

upper sequence: AT4G36190.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G24270.1 (Glycine max), 5'ss of exon 5
TGCTTGGTTCCGGCTTAAGTTCCCTCATTTGACCTGTGGAAGCCTCGCTAGTTCAGCAGTTGTTCGTGCTGTCTACGAATTCCCCGAATTTGATCAACAGgtattcgttacaatattcaactttaagtgaagaaatgttgtgtttcttcatatagagtttagttgctgacagaatcgagatttttatacctt--attgaatag-------------------------------------
||| |||||||| || ||||| || ||||| || |||||||| || || ||||| |||||||||| |||||| ||  | ||| | |||| ||||||||||||   | |    || ||    || |  |  | |  | |||| |||  |  | ||||   ||      | || | |     ||| |  |  ||   |  |||                                       
TGCATGGTTCCGTCTCAAGTTTCCCCATTTAACATGTGGAAGTCTGGCAAGTTCTGCAGTTGTTCTTGCTGTTTATAACTTCACAGAATATGATCAACAGgtgaacatagttatttttg-tttcacat--acatcttttgttttttctattctagatgctaaaataagtcaaagttcccttttattcaatttcagtcaaattttgaatttagttgagtgagttctatctttcacatgcag