Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGGAGATTTGGTTGATAAAATACCTAAAATCAAAATCACTGGCAAAAACAACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAGgttttttgctcatttcagctcaaacgaaatcttaattccccaaatgcagaaccaaaaggtttagttcttgatcttcttttgtgtaactttttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G35840.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125112588|gb|EL163650.1|EL163650
EST:     CAAACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAG                         GATTTTCAACTTGGTGAAACGGTGAGAAGCTTGCCACATTGTCAT
genomic: C-AACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAGgttttttgct ... ctttttgcagGATTTTCAACTTGGTGAAACGGTGAGAAGCTTGCCACATTGTCAT
EST: gi|125219422|gb|EL233507.1|EL233507
EST:     ACAACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAG                         GATTTTCAACTTGGTGAAACGGTGAGAAG
genomic: ACAACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAGgttttttgct ... ctttttgcagGATTTTCAACTTGGTGAAACGGTGAGAAG
EST: gi|19798828|gb|AU230118.1|AU230118
EST:     ACAACTTAGATGCTTCT-GCAACAAAGACTCATGTTCTGTTTGTCTTCAG                         GATTTTCAACTTGGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATG
genomic: ACAACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAGgttttttgct ... ctttttgcagGATTTTCAACTTGGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATG
EST: gi|164158454|gb|ES060171.1|ES060171
EST:     GCAACAAAGACTCATGTTCTGTTTGTCTTCAG                         GATCTTCAACTTGGTGAAACGGTGAGAAGCTTGCCACA
genomic: GCAACAAAGACTCATGTTCTGTTTGTCTTCAGgttttttgct ... ctttttgcagGATTTTCAACTTGGTGAAACGGTGAGAAGCTTGCCACA
EST: gi|86084376|gb|DR380135.1|DR380135
EST:     ACAACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAG                         GATTTTCAACTTGGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATG
genomic: ACAACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAGgttttttgct ... ctttttgcagGATTTTCAACTTGGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATG