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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACTTTGATCCTCAACAGTATGTCAATACAATGCAACAGGTTATGCATAACCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAGgttaggaattgatgactttttccatctaatcgaggtgtggctttgaatgaagctctgtgtcttatctgattttatttattttttttgcctacag

Basic information

species Arabidopsis thaliana
transcript AT4G35450.5
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125313398|gb|EL327483.1|EL327483
EST:     CCCTGACTTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAG                         GATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAAT
genomic: CCCTGA-GTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAAT
EST: gi|86041544|gb|DR337299.1|DR337299
EST:     ACCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAG                         GATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAAC
genomic: ACCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAAC
EST: gi|124929305|gb|EL006863.1|EL006863
EST:     CCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAG                         GATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
genomic: CCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
EST: gi|125327642|gb|EL341722.1|EL341722
EST:     CGCCTTAGTTCAG                         GATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
genomic: CGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
EST: gi|125074191|gb|EL138233.1|EL138233
EST:     ACCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAG                         GATCCAACAAATGTCTCCTTTTTTGGATGCTTTCTCG
genomic: ACCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCA-CAAATGTCTCCTTTTTTGGATGCTTTCTCG
EST: gi|125275455|gb|EL289540.1|EL289540
EST:     CCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAG                         GATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
genomic: CCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
EST: gi|125181418|gb|EL197647.1|EL197647
EST:     AAACTTGGTACCGCCTTAGTTCAG                         GATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
genomic: AAACTTGGTACCGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
EST: gi|86041556|gb|DR337311.1|DR337311
EST:     ACCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAG                         GATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
genomic: ACCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
EST: gi|164099224|gb|ES190737.1|ES190737
EST:     ACCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAG                         GATCCACAAATGTCTCCTTTTTTAGGTATGCTTTCTCGAATCCTGAAACAG
genomic: ACCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCACAAATGTCTCCTTTTTT-GG-ATGCTTTCTCGAATCCTGAAACAG
EST: gi|125164529|gb|EL191226.1|EL191226
EST:     ACCCTGACTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAG                         GATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAAT
genomic: ACCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAAT
EST: gi|125325848|gb|EL339928.1|EL339928
EST:     CCGCCTTAGTTCAG                         GATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
genomic: CCGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
EST: gi|124795445|gb|EH885124.1|EH885124
EST:     TGGCCGAGAAACTTGGTACCGCCTTAGTTCAG                         GATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
genomic: TGGCCGAGAAACTTGGTACCGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCA
EST: gi|124994228|gb|EL066497.1|EL066497
EST:     TTGGTACCGCCTTAGTTCAG                         GATCCACAAATGTCTTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGC
genomic: TTGGTACCGCCTTAGTTCAGgttaggaatt ... ttgcctacagGATCCACAAATGTC-TCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGC