Sequence
atgc intronic sequence ATGC exonic sequenceGTGGTACGAAGGAGTACAAGATTCTAATGGACCAATTTCACCATGTTTCTGCAGCTTTTTTGGAACTTGAAAAAGGgttagttctaatatttgctatacgcacttctgttctactttatagattttttctgctcatgttgtctcacgtttattgagttactcaatttgttgatactcttatctgctttctgacaatactaattacctcatttttaacatatgcttttgtatatgaag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G34640.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G34640.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G11960.3 (Glycine max), 5'ss of exon 4
GTGGTACGAAGGAGTACAAGATTCTAATGGACCAATTTCACCATGTTTCTGCAGCTTTTTTGGAACTTGAAAAAGGgttagttctaatatttgctatacgcacttctgttctactttatagattttttctgctcatgttgtctcacgtttattgagttactcaatttgttgatactcttatctgctttctgacaatactaattacctcatttttaacatatgcttttgtatatgaag
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GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAACTGCTTTTCTGGAACTTGGGAAGAAgtcagttcttatacttgc-acatttagctaaattgaattttaata--ttctgcagcatatgtggtctcaagtt-gctgtttgtttccatcc-ttgatccaatcag--------------------------------------------------------
upper sequence: AT4G34640.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G04220.3 (Glycine max), 5'ss of exon 4
GTGGTACGAAGGAGTACAAGATTCTAATGGACCAATTTCACCATGTTTCTGCAGCTTTTTTGGAACTTGAAAAAGGgttagttctaatatttgctatacgcacttctgttctactttatagattttttctgctcatgttgtctcacgtttattgagttactcaatttgttgatactcttatctgctttctgacaatactaattacctcatttttaacatatgcttttgtatatgaag
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GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAACTGCTTTTCTGGAACTTGGAAAGAAgtcagtttttatccttgc-acatttacctaaattgaacttta-atattctgtac-catatatggtctcaagtt-gctgtttgtttccatcc-ttgatccaatcag--------------------------------------------------------
upper sequence: AT4G34640.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv03s0038g00450.t01 (Vitis vinifera), 5'ss of exon 4
GTGGTACGAAGGAGTACAAGATTCTAATGGACCAATTTCACCATGTTTCTGCAGCTTTTTTGGAACTTGAAAAAGGgttagttctaatatttgctatacgcacttctgttctactttatagattttttctgctcatgttgtctcacgt-ttattgagttactcaatttgttgatactcttatctgctttctgacaatactaattacctcatttttaacatatgcttttgtatatgaag
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GTGGTACAAAGGACTACAAGGTTCTCATGGACCAATTCCATCATGTTTCAACTGCTTTTCTGGAGCTTGAAAGAGGgttaattcttattcttgcacttttcctcttataaatactcaaatgtttctatctgtgaatatgacttctcttattattca--tattaaagctcctgcaacca------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125150857|gb|EL183289.1|EL183289EST: TTCTGCAGCTTTTTTGGAACTTGAAAAAGG GTATCAAGAGGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGC
genomic: TTCTGCAGCTTTTTTGGAACTTGAAAAAGGgttagttcta ... gtatatgaagGTATCAAGAGGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGTACGAAGGAGTACAAGATTCTAATGGACCAATTTCACCATGTTTCTGCAGCTTTTTTGGAACTTGAAAAAGGgttagttctaatatttgctatacgcacttctgttctactttatagattttttctgctcatgttgtctcacgtttattgagttactcaatttgttgatactcttatctgctttctgacaatactaattacctcatttttaacatatgcttttgtatatgaag
- - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT