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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATAAAAGTGGTGCAAGCTGACATGCTAGACCTCCCATTTGACAGCGAGTCTTTTGATGTGGTTATTGAGAAAGGGACCATGgtaaaatctgtaactgagctacaactttctttcgatccattgtttgtttaggacttcagatttttcagtgaggttctaaagtatatattttcttgaaaaggagagatagctcatgatttgtccctttttgtaattaatctcgtgttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G34360.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G12910.1 (Glycine max), 5'ss of exon 4
AAATAAAAGTGGTGCAAGCTGACATGCTAGACCTCCCATTTGACAGCGAGTCTTTTGATGTGGTTATTGAGAAAGGGACCATGgtaaaatctgtaactgagctacaactttctttcgatccattgtttgtttaggacttcagatttttcagtga-ggttctaaagtatatattttcttgaaaaggagagatagctcatgatttgtccctttttgtaattaatctcgtgttgtag
| ||||||||| |||||||||| |||||||| || || |||||    || | ||||||| |||||||||||||||| || ||||||||         |||   | || |||| || |||| ||  |  | ||  ||||| |  ||||  | | | | || |      | |||  ||  |     || || |     || |  ||    | || ||  | ||  | |        
ACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAATGTTTTGATTTGGTTATTGAGAAAGGAACTATGgtaaa--------ttga---ataattttcctttgatctatgatgggattttgacttgatgttttaaactaatgattatggttcctgtatgatcgagtgtttga-agtttatggattaaatgcgattcttggttttgaaatttgaag-----

upper sequence: AT4G34360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv03s0063g02010.t01 (Vitis vinifera), 5'ss of exon 4
AAATAAAAGTGGTGCAAGCTGACATGCTAGACCTCCCATTTGACAGCGAGTCTTTTGATGTGGTTATTGAGAAAGGGACCATGgtaaaatctgtaactgagctacaactttctttcgatccattgtttgtttaggacttcagatttttcagtgaggttctaaagtatatattttcttgaaaaggagagatagctcatgatttgtccctttttgtaattaatctcgtgttgtag
|||| |||||| || ||||||||||||||||| | || |||  || ||||| |||||||||||||||||||||||| ||||||||||| | |  || | | | |   || | |||| | |   | ||| ||||    |||   ||||| | |     |  |   | ||||| || || ||   ||                                                
AAATCAAAGTGCTGGAAGCTGACATGCTAGACTTGCCCTTTAGCAACGAGTGTTTTGATGTGGTTATTGAGAAAGGAACCATGgtaaact-tacaattca-caatggctctgtttcaacctgct-tttattta----ttcttgtttttaattag---ttgagtatgtatatcttttttaatttgaag----------------------------------------------