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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTTCACTGTACTGTGTCCGGTGTGTCAGATTATTTTGCTCAAGgtacatatattcatctctttctgcaatttaatatgaaaacaataatcgtgttttagagtttagaccttaagatgctctaagcttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G34030.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G33620.1 (Glycine max), 5'ss of exon 3
GCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTTCACTGTACTGTGTCCGGTGTGTCAGATTATTTTGCTCAAGgtacatatattcatctctttctgcaattta-atatgaaaacaataatcgtgttttagagtttagaccttaagatgctctaagcttgcag--------------------------
||||| || ||||||||||| ||||| |||||||| ||||| || ||||| ||||| |    ||| ||||| || |||||||||||||||||||  |    |     ||||||      || || |||    |   |   ||   || | |   ||| | ||  |  |      |||                             
GCTGCCACTGGAGAAGAAGTCTCAGCAGAGGATTTGGGAGGTGCTACTGTGCACTGCAAGACGTCAGGTGTTTCTGATTATTTTGCTCAAGgtatttgccgtggatactttctcttgcatacatctgagggtatagaaaatgcgata-actaatgacatcaacttagttcctatttgtgactttgtacatgttttgtttcttgtag

upper sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv03s0063g00290.t01 (Vitis vinifera), 5'ss of exon 4
GCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTTCACTGTACTGTGTCCGGTGTGTCAGATTATTTTGCTCAAGgtacatatattc-atctctttctgcaatttaatatgaaaacaataatcgtgttttagagttta---gaccttaagatgctctaagcttgcag-------------
|||||||||||||||||||| || ||||||||||| ||||| || ||||| || || |     || || || ||||||||||||||||||||||      |||  |  |  | ||| ||  | | ||| |    |||     ||||  | | |    || |||    |||| |   ||||||              
GCTGCTACAGGAGAAGAAGTCTCTGCTGAGGATTTGGGAGGTGCAACTGTGCATTGCAAAACATCAGGGGTTTCAGATTATTTTGCTCAAGgtattctccttctgttaccctgtgctatcca-tctgacatggctaac----ttttgaactctctctgatctttcagtgctttcttcttgcaccactgatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059294|gb|DR355051.1|DR355051
EST:     CGCCACTGTTCACTGTACTGTGTCCGGTGTGTCAGATTATTTTGCTCAAG                         ACGAGCTACATGGCCTCGCTATTGGAAGAAACATTGTCAAGAATTTGCACA
genomic: CGCCACTGTTCACTGTACTGTGTCCGGTGTGTCAGATTATTTTGCTCAAGgtacatatat ... aagcttgcagACGAGCTACATGGCCTCGCTATTGGAAGAAACATTGTCAAGAATTTGCACA
EST: gi|86088396|gb|DR384155.1|DR384155
EST:     CGCCACTGTTCACTGTACTGTGTCCGGTGTGTCAGATTATTTTGCTCAAG                         ACGAGCTACATGGCCTCGCTATTGGAAGAAACATTGTCAAGAATTTGCACA
genomic: CGCCACTGTTCACTGTACTGTGTCCGGTGTGTCAGATTATTTTGCTCAAGgtacatatat ... aagcttgcagACGAGCTACATGGCCTCGCTATTGGAAGAAACATTGTCAAGAATTTGCACA