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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAGGTTTTTCTTCCAGCAACTCATTTCAGGAGTTAGTTACTGTCATGCTATGgtaatgaaaaatgctctctatcaaatcaatgcttcatcctctgtgaaattcagctgacttaagaagttaaattttatgttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G33950.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33950.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G15330.1 (Glycine max), 5'ss of exon 4
GCGAGGTTTTTCTTCCAGCAACTCATTTCAGGAGTTAGTTACTGTCATGCTATGgta-atgaa--------aaatgctctcta-tcaaatcaatgcttcatcctctgtgaaattcagctgacttaagaagttaaattttatgttgtag--------------------
||| | || |||||||| ||||| || ||||||||||| ||||||||||| |||||| |||||        |  |  ||| || |   | || |  ||      |    | |   ||    | | ||| ||   | || |  || ||                     
GCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATGgtacatgaattcaacacatgtagtctttacttttaccagttatttgcttcccagaagaa--agaaagcatgagatgtctgacttgaatttctatatttgtcttctttaatgaag