1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGAACTTTTATCAGTGCTTCAGAAGAGAGTACTGGTGCTCTGGATTTTGTTGAAAGGAAAATCGCAAGAGCTACGATGATCCCAAGGTCCCATGGAGAGgtatgattctctacttcccaaatctatgtgaatcgtaaaactaaggcatgttgaaagtggcaaacgtaggcttgatggcctttggtttagtgcttatcacccctttaattgtacgagatttgatgtttttggcag
species | Arabidopsis thaliana |
transcript | AT4G33910.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGAAAGGAAAATCGCAAGAGCTACGATGATCCCAAGGTCCCATGGAGAG TCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTATGATTCCCACTATEST: gi|86074577|gb|DR370334.1|DR370334
genomic: TTGAAAGGAAAATCGCAAGAGCTACGATGATCCCAAGGTCCCATGGAGAGgtatgattct ... tttttggcagTCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTATGATTCCCACTAT
EST: TTGAAAGGAAAATCGCAAGAGCTACGATGATCCCAAGGTCCCATGGAGAG TCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTATGATTCCCACTATEST: gi|86081200|gb|DR376957.1|DR376957
genomic: TTGAAAGGAAAATCGCAAGAGCTACGATGATCCCAAGGTCCCATGGAGAGgtatgattct ... tttttggcagTCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTATGATTCCCACTAT
EST: TTGAAAGGAAAATCGCAAGAGCTACGATGATCCCAAGGTCTCATGGAGAG TCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTATGATTCCCACTATEST: gi|124731662|gb|EH823064.1|EH823064
genomic: TTGAAAGGAAAATCGCAAGAGCTACGATGATCCCAAGGTCCCATGGAGAGgtatgattct ... tttttggcagTCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTATGATTCCCACTAT
EST: TCCCATGGAGAG TCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTATGATTCCCACTAT
genomic: TCCCATGGAGAGgtatgattct ... tttttggcagTCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTATGATTCCCACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAACTTTTATCAGTGCTTCAGAAGAGAGTACTGGTGCTCTGGATTTTGTTGAAAGGAAAATCGCAAGAGCTACGATGATCCCAAGGTCCCATGGAGAGgtatgattctctacttcccaaatctatgtgaatcgtaaaactaaggcatgttgaaagtggcaaacgtaggcttgatggcctttggtttagtgcttatcacccctttaattgtacgagatttgatgtttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA