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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATTATGGACAAAGGTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTGCCAGGAGgtaaacctgtggttgctcacaactattgctttttaatttatttagtgtggctcttcttttatgtgacttgagctttattgcttctgttctgtacttattt...

Basic information

species Arabidopsis thaliana
transcript AT4G33650.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA04G16340.1 (Glycine max), 5'ss of exon 4
GGATATTATGGACAAAGGTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTGCCAGGAGgtaaacctgtggttgctcacaactattgctttttaatttatttagtgtggctcttcttttatgtgacttgagctttattgcttctgttctgtacttattt---
|||||| ||||||| ||||||||||||||| || ||  | || ||||| ||| |||| || |||||||| || || || ||||||||||||||||||||||||    | |  |     ||    ||         ||| |  || | |  | |||     ||||    | || | |  | |  | | ||  |   ||      
GGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGGAGgtagtgattttata--ctacggtgataaaggcagtattaaactactttaac-ctttacacatgtcctattagatgttataccacaggtcattgtatacacaca

upper sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 4
GGATATTATGGACAAAGGTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTGCCAGGAGgtaaacctgtg----gttgctcacaactattgcttttt-----------aatttatttagtgtggctcttcttttatgtgacttgagctttattgc-ttctgttctgtacttattt--------------
|||||| ||||||| ||||||||||||||| || ||  | || ||||| ||| |||||||||||||||| || || || |||||||||||  | |||||||||| | ||        || ||| ||   ||  |||||           |||  || ||     |   ||   ||   || | |||   ||| |   |  | || | || |||||               
GGATATAATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCTCTTCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcatgcttcacactgttcataagggttttttttttttcaaatacaaataaatataaacatgtaatttgcttgattggcatgaaggttaatatgtatttttatttatttattgtttcatcatattag

upper sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 4
GGATATTATGGACAAAGGTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTGCCAGGAGgtaa----acctgtggttgctcacaactattgctttttaat-ttatttagtgtg-----gctcttcttttatgtgacttgagctttattgcttctgttctgtacttattt--------------
|||||| ||||||| |||||||||||| || || ||  | || ||||| ||| ||||||| |||||||| || || || |||||||||||  | ||||||||||    || |     ||  || ||   |   |||  |||   | | | | |      |  |||   | |  |||| |||   ||| |  | |  || |  | |||||               
GGATATAATGGACAGAGGTACTGATGCCCGGAATCTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcacacttcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtactttgctcaattgacatgaaggttaata-tgcaatttttaatttattgtttcatcatattag