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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTTGTTCACAAGGATTCTCCTAGAGGGACACATTTTAGACGTGCAGGCCCGCGCCAAAAGgtacttcatctactccatgagtttcctttgctctgcagcttctgtatttgatgatgtaaaaactgctgatatatgattatatattgtgtttag

Basic information

species Arabidopsis thaliana
transcript AT4G32840.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32840.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA04G09180.1 (Glycine max), 5'ss of exon 4
ATTGTTGTTCACAAGGATTCTCCTAGAGGGACACATTTTAGACGTGCAGGCCCGCGCCAAAAGgtacttcatctactccatgagttt-cctttgctctgcagcttctgtatttgatgatgtaaaaactgctgatatatgattatatattgtgtttag-----------------------------
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GTTGTTGTTCACAAGGATAGTCCAAGAGGTATACATTTTCGACGTGCAGGGCCTCGGCAAAAGgtcatttcccttgtttgtctgtgcatatatattatatattattaagaactaagaatattaaaa-----aatgtataatta-attttgtttccactcaccaacacctaatcatatgctgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874592|gb|AU235423.1|AU235423
EST:     AGGATTCTCCTAGAGGGACACATTTTAGACGTGCAGGCCCGCGCCAAAAG                         GTGTACTTCAAGCCATCTGATGTGCGTGCCTGTATTGTCACTTGTGGTGGC
genomic: AGGATTCTCCTAGAGGGACACATTTTAGACGTGCAGGCCCGCGCCAAAAGgtacttcatc ... ttgtgtttagGTGTACTTCAAGCCATCTGATGTGCGTGCCTGTATTGTCACTTGTGGTGGC