1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCCCACGGCGTCTTTGTTTGTTCAAGACCACAACGGGTTTACCTCTTAGGGAATTGAATTTTTTAACTTCTATACTCGCTGTTCGTATGAACAAGAAAAGgtttgttaccgaacttatgacttcagattgttgtttgttttgtctttgagagtgtgaattcatggttctgtgattgcttcttatcag
species | Arabidopsis thaliana |
transcript | AT4G30510.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAATTGAATTTTTTAACTTCTATACTCGCTGTTCGTATGAACAAGAAAAG ACTTGTTGTTGTGCTGCTAGAGAAAACATTCGTTTACGACTTGAATACTEST: gi|124776470|gb|EH866597.1|EH866597
genomic: GAATTGAATTTTTTAACTTCTATACTCGCTGTTCGTATGAACAAGAAAAGgtttgttacc ... ttcttatcagACTTGTTGTTGTGCTGCTAGAGAAAACATTCGTTTACGACTTGAATACT
EST: CTATACTCGCTGTTCGTATGAACAAGAAAAG ACTTGTTGTTGTGCTGCTAGAGAAAACATTCGTTTACGACTTGAATACTCT
genomic: CTATACTCGCTGTTCGTATGAACAAGAAAAGgtttgttacc ... ttcttatcagACTTGTTGTTGTGCTGCTAGAGAAAACATTCGTTTACGACTTGAATACTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCACGGCGTCTTTGTTTGTTCAAGACCACAACGGGTTTACCTCTTAGGGAATTGAATTTTTTAACTTCTATACTCGCTGTTCGTATGAACAAGAAAAGgtttgttaccgaacttatgacttcagattgttgtttgttttgtctttgagagtgtgaattcatggttctgtgattgcttcttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA