1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGAGAACTACAGCGAGAGAGTTCTACCTTCTATAATCAACGAGACTTTGAAAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaatgactgtgaatatatgatcatcttttttctctttcttagtaagtgaagttcttaaagatttattccgggcttctctcag
species | Arabidopsis thaliana |
transcript | AT4G28510.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAG GCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTCEST: gi|86047143|gb|DR342898.1|DR342898
genomic: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaat ... cttctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC
EST: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAG GCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTCEST: gi|116467281|gb|EG509873.1|EG509873
genomic: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaat ... cttctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC
EST: GCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAG GCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTCEST: gi|125266517|gb|EL280602.1|EL280602
genomic: GCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaat ... cttctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC
EST: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAG GCGGTCAGTAGGGAGATCAGGEST: gi|125246189|gb|EL260274.1|EL260274
genomic: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaat ... cttctctcagGCGGTCAGTAGGGAGATCAGG
EST: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAG GCGGTCAGTAGGGAGATCAGGAAGATTCTEST: gi|86047149|gb|DR342904.1|DR342904
genomic: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaat ... cttctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCT
EST: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCANAGAGAG GCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC
genomic: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaat ... cttctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAACTACAGCGAGAGAGTTCTACCTTCTATAATCAACGAGACTTTGAAAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaatgactgtgaatatatgatcatcttttttctctttcttagtaagtgaagttcttaaagatttattccgggcttctctcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG