1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAGCCATCAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATGAGATAAgtaagttgttcgtgttttttcttttccggtgatagttacatatctgttttttcctatttctaattcatgtttttccag
species | Arabidopsis thaliana |
transcript | AT4G27585.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATGAGATAA GGGATATTATGCCCCCEST: gi|125298669|gb|EL312754.1|EL312754
genomic: CAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATGAGATAAgtaagttgtt ... gtttttccagGGGATATTATGCCCCC
EST: CAATGTTGCTGCAAAAGACTGGGGTCTTCGGTGCCTTCGTTATGAGATAA GGGATATTATGCCCCCTCATGGAGTGCGEST: gi|125188809|gb|EL203763.1|EL203763
genomic: CAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATGAGATAAgtaagttgtt ... gtttttccagGGGATATTATGCCCCCTCATGGAGTGCG
EST: CAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATGAGATAA GGGATATTATGCCCCCTCATGGAGTGCGAGCTGCTATGGAAEST: gi|164166474|gb|ES194042.1|ES194042
genomic: CAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATGAGATAAgtaagttgtt ... gtttttccagGGGATATTATGCCCCCTCATGGAGTGCGAGCTGCTATGGAA
EST: CAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATGAGATAA GGGATATTATGCCCCCEST: gi|125264693|gb|EL278778.1|EL278778
genomic: CAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATGAGATAAgtaagttgtt ... gtttttccagGGGATATTATGCCCCC
EST: CAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATGAGATAA GGGATATTATGCCCCCTCATGGAGTGC
genomic: CAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATGAGATAAgtaagttgtt ... gtttttccagGGGATATTATGCCCCCTCATGGAGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCCATCAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATGAGATAAgtaagttgttcgtgttttttcttttccggtgatagttacatatctgttttttcctatttctaattcatgtttttccag
- - - - - - - TGCTGC