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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGATGAAAGAACAGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttatttgttgattcttttttatattttgttgttgttgtgtttgctgttgttttgtcatcgtcttgatttcgtaataagaacatgtagtttaataacattttcctgaatttgataaaattgtggtgaaaagaggcataattttttctttggttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G27040.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116404485|gb|EG447077.1|EG447077
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404457|gb|EG447049.1|EG447049
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404471|gb|EG447063.1|EG447063
EST:     AGTTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404489|gb|EG447081.1|EG447081
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|164214477|gb|EL976001.1|EL976001
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTC
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTC
EST: gi|116404468|gb|EG447060.1|EG447060
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404480|gb|EG447072.1|EG447072
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404481|gb|EG447073.1|EG447073
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404466|gb|EG447058.1|EG447058
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404478|gb|EG447070.1|EG447070
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404474|gb|EG447066.1|EG447066
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404364|gb|EG446956.1|EG446956
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404464|gb|EG447056.1|EG447056
EST:     TAAACACCAAG                         AATGACATTCGTAAGAATCCCTGCCTTCAGGGCTCAGTTCCATGAAATGT
genomic: TAAACA-CAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAAT-CCTGCCTTCAGGGCTCAGTTCCATGAAATGT
EST: gi|116404356|gb|EG446948.1|EG446948
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAGG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404487|gb|EG447079.1|EG447079
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404482|gb|EG447074.1|EG447074
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404362|gb|EG446954.1|EG446954
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|164029608|gb|ES079656.1|ES079656
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCG
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCG
EST: gi|116404459|gb|EG447051.1|EG447051
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404490|gb|EG447082.1|EG447082
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAGG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404461|gb|EG447053.1|EG447053
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|124760471|gb|EH850601.1|EH850601
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTA
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTA
EST: gi|116404472|gb|EG447064.1|EG447064
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
EST: gi|116404455|gb|EG447047.1|EG447047
EST:     AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG                         AATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT
genomic: AGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttattt ... ttggttgcagAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGATGAAAGAACAGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGgtcgttatttgttgattcttttttatattttgttgttgttgtgtttgctgttgttttgtcatcgtcttgatttcgtaataagaacatgtagtttaataacattttcctgaatttgataaaattgtggtgaaaagaggcataattttttctttggttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA