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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTCACTAAAAGAAAGTATCTGATGGTTGTTGGTGTTAATACTGCGTTTAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgatctaagcagcggtttcagccttaagtatattgtctgggactaaacatgtgtcttctttag

Basic information

species Arabidopsis thaliana
transcript AT4G26940.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26940.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv19s0090g00560.t01 (Vitis vinifera), 5'ss of exon 4
ACTGTCACTAAAAGAAAGTATCTGATGGTTGTTGGTGTTAATACTGCGTTTAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgatctaagcagcggtttcagccttaagtatattgtctgggactaaacatgtgtcttctttag---------------------------
 |       | |||||| ||| | |||||| ||||  | |||||||| ||||| || |||||||| || |||||||| || |||||||||||||| |  ||| | |  ||  |  |     | |   |  ||  | | || | |    ||     ||   ||  ||||                            
TCGAGTGGGAGAAGAAAATATTTAATGGTTATTGGCATCAATACTGCTTTTAGTAGTAGAAAGCGGAGAGATTCAGTTCGCGCTACTTGGATGCCACAAGgt-tctgaattgatcctatactctttccactattttttttttttttccctgtttgtgaaactaatttatgacaatctttttctttatgaaaattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116483920|gb|EG526512.1|EG526512
EST:     TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCG                         GTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTG
genomic: TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgat ... tcttctttagGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTG
EST: gi|116459773|gb|EG502365.1|EG502365
EST:     TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCG                         GTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTG
genomic: TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgat ... tcttctttagGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTG
EST: gi|116459771|gb|EG502363.1|EG502363
EST:     TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCG                         GTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTG
genomic: TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgat ... tcttctttagGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTG
EST: gi|125079095|gb|EL141230.1|EL141230
EST:     ATTCAGTCCGTGCTACTTGGATGCCTCCCG                         GTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTG
genomic: ATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgat ... tcttctttagGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTG
EST: gi|125258918|gb|EL273003.1|EL273003
EST:     TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCG                         GTGAGGAGAGAAAGAAGCTCGAGG
genomic: TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgat ... tcttctttagGTGAGGAGAGAAAGAAGCTCGAGG