Sequence
atgc intronic sequence ATGC exonic sequenceGCTGAAGCTTTGTGCAAATATATTGAGAATGACCGTCCATTTCTAGGCATATGTCTTGGTCTACAACTACTTTTCGATTCTAGTGAAGAGAATGGACCAGgtttagctccgttgctccactttatattatgtcttctagaatttttccctcgatacattcaactacattatgatatcatgtatttttgtacttaacaactgtatatgtgacag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G26900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G12920.1 (Glycine max), 5'ss of exon 4
GCTGAAGCTTTGTGCAAATATATTGAGAATGACCGTCCATTTCTAGGCATATGTCTTGGTCTACAACTACTTTTCGATTCTAGTGAAGAGAATGGACCAGgtttagctccgttgctccactttatattatgtcttctag--aatttttccctcgatacattcaactacattatgatatcat-gtatttttgtacttaacaactgtatatgtgacag
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GATGAAGCACTATGTTCATATATTGACAAGGATCGTCCATTTCTGGGCATTTGTCTTGGACTTCAACTACTTTTTGAATCTAGTGAGGAGAATGGACCAGgtt-agtt--ataagccatctttagtttttgactttttgttatcgttacacctacaactttgaacatttttttaatattatagcataaatgaatgccaagctt-------------
upper sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G10460.1 (Glycine max), 5'ss of exon 4
-GCTGAAGCTTTGTGCAAATATATTGAGAATGACCGTCCATTTCTAGGCATATGTCTTGGTCTACAACTACTTTTCGATTCTAGTGAAGAGAATGGACCAGgtttagctccgttgctccactttatattatgtcttctagaatttttccctcgatacattcaactacattatgatatcatgtatttttgtacttaacaactgtatatgtgacag
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GGATGAAGCACTATGTTCATATATTGACAAGGATCGTCCATTTTTGGGCATTTGTCTTGGACTTCAACTACTTTTTGAATCTAGTGAGGAGAATGGACCAggtt--acttataagccatctttagtttttgactttttgttatcgttacacctacaattttga--acattttttta----atattatagca-taaatgaatgccaagct-----
upper sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv19s0090g00810.t01 (Vitis vinifera), 5'ss of exon 3
GCTGAAGCTTTGTGCAAATATATTGAGAATGACCGTCCATTTCTAGGCATATGTCTTGGTCTACAACTACTTTTCGATTCTAGTGAAGAGAATGGACCAGgtttagctccgttgctccactttatattatgtcttctagaatttttccctcgatacattcaactacattatgatatcatgtatttttgtacttaacaactgtatatgtgacag---
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GCTGAAGCTCTATGTACTTACATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTACAGCTACTTTTTGAGTCCAGTGAGGAAAATGGACCAGgtcaatttt--ttaagcgtctatattttctttattctag------ttcctta------tcagttgctttcttttattgaacatatctttagtccataa--ggcagcatgacaggaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164202310|gb|ES130340.1|ES130340EST: ACTTTTCGATTCTAGTGAAGAGAATGGACCAG TCAAAGGTCTTGGTGTGATACCGGGAATAGTTGGACGCTTTGATGCTTCAG
genomic: ACTTTTCGATTCTAGTGAAGAGAATGGACCAGgtttagctcc ... tatgtgacagTCAAAGGTCTTGGTGTGATACCGGGAATAGTTGGACGCTTTGATGCTTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGAAGCTTTGTGCAAATATATTGAGAATGACCGTCCATTTCTAGGCATATGTCTTGGTCTACAACTACTTTTCGATTCTAGTGAAGAGAATGGACCAGgtttagctccgttgctccactttatattatgtcttctagaatttttccctcgatacattcaactacattatgatatcatgtatttttgtacttaacaactgtatatgtgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA