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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGCAAATCATCTAGATCGAGCTGTTTCAAATCTTGGGAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattttacctctatgctgatttccttgtccagcctcttcagttggctgactgattgattatggatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G26860.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164001242|gb|ES181021.1|ES181021
EST:     GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTT                         CTAAATCTGGAATCGAACCTTC
genomic: GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattt ... atggatgcagCTAAATCTGGAATCGAACCTTC
EST: gi|124921134|gb|EH994781.1|EH994781
EST:     GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTT                         A
genomic: GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattt ... atggatgcag-
EST: gi|124921134|gb|EH994781.1|EH994781
EST:     GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTT                         A
genomic: GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattt ... atggatgcag-
EST: gi|86076079|gb|DR371836.1|DR371836
EST:     GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTT                         CTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGA
genomic: GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattt ... atggatgcagCTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGA
EST: gi|164152674|gb|ES140960.1|ES140960
EST:     CAAGCGGAGAAGTTT                         CTAAATCTGGAATCGAACCTTCCAGCGTTCTAGAGCTAGCAAGACATGTGA
genomic: CAAGCGGAGAAGTTTgtgagtattt ... atggatgcagCTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGA
EST: gi|116472743|gb|EG515335.1|EG515335
EST:     GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTT                         CTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGA
genomic: GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattt ... atggatgcagCTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGA
EST: gi|86082547|gb|DR378306.1|DR378306
EST:     GAGACATCCACTAAAGGTTTTGGYCCAAGTGAACACAAGCGGAGAAGTTT                         CTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGYAAGMCATGTGA
genomic: GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattt ... atggatgcagCTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAGCAAATCATCTAGATCGAGCTGTTTCAAATCTTGGGAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattttacctctatgctgatttccttgtccagcctcttcagttggctgactgattgattatggatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT