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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTCTTCCAGTTTGAAGCTGGTGAAGATGCCCAAGTTCAGTTCTTCCCTTGCATGCCTATTGACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATgtaaagactcttgtgcagagagcttggttttttctttcttccttttattggtttcgctagcaaaagattaattctttattgttgtttttaacag

Basic information

species Arabidopsis thaliana
transcript AT4G26850.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26850.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G43200.1 (Glycine max), 5'ss of exon 5
GTTGCTCTTCCAGTTTGAAGCTGGTGAAGATGCCCAAGTTCAGTTCTTCCCTTGCATGCCTATTGACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATgtaaagactcttgtgcagagagcttggttttttctttcttccttttattggtttcgctagcaaaagattaattctttattg--ttgtttttaacag
| | || || ||| |||| ||| |  | ||||   | | ||| ||||| ||     ||||||||||   |||||||||||| ||| ||||||||||||||||||      |           ||    | ||| |   |     ||| |    | | |    | |   || || | | |     | ||||||||||
GGTCCTGTTTCAGCTTGAGGCTAGCAATGATGGGGAGGCTCAATTCTTTCCCAATGTGCCTATTGATGTTGAGAATTCTCCTAGTTTTGTTGCCATCAATgtaagtttcttgaatttttttcctccagtctttgtcattgagggttagtaaaataggtgtttatatgatacttttctgtgtacctttttttaacag

upper sequence: AT4G26850.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G10430.1 (Glycine max), 5'ss of exon 4
-GTTGCTCTTCCAGTTTGAAGCTGGTGAAGATGCCCAAGTTCAGTTCTTCCCTTGCATGCCTATTGACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATgtaaagactcttgtgcagagagcttggttttttctttcttccttttattggtttcgctagcaaaagattaattctttattgttgtttttaacag
 | | || || ||| |||| ||| |  | ||||   | ||||| ||||| ||       ||||||||    ||||||||||| ||| |||||||||||||||||| |  |||| |  | |       ||  |    |   ||  |  | | | |  | |   |  | | |  ||| || |   | ||||||||| 
AGGTCCTGTTTCAGCTTGAGGCTAGCAATGATGGGGAGGTTCAATTCTTTCCAAATGCACCTATTGATGTAGAGAATTCTCCTAGTTTTGTTGCCATCAAtgtaa-gtttcttttaaaaaa------gtcctccagtctgtcagtaaaataggt--gtttatatgatactt-ttccttgtacctttttttaaca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124724826|gb|EH816228.1|EH816228
EST:     CCCTGAGAATTCTCCCAGTGTTGTTGCCATCAAT                         GTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
genomic: CCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATgtaaagactc ... tttttaacagGTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
EST: gi|124844500|gb|EH928937.1|EH928937
EST:     GACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAAT                         GTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
genomic: GACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATgtaaagactc ... tttttaacagGTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
EST: gi|124771223|gb|EH861353.1|EH861353
EST:     TCCCAGTGTTGTTGCCATCAAT                         GTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
genomic: TCCCAGTGTTGTTGCCATCAATgtaaagactc ... tttttaacagGTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
EST: gi|124952444|gb|EL027714.1|EL027714
EST:     CCAGTGTTGTTGCCATCAAT                         GTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
genomic: CCAGTGTTGTTGCCATCAATgtaaagactc ... tttttaacagGTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
EST: gi|124971543|gb|EL045302.1|EL045302
EST:     ACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAAT                         GTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
genomic: ACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATgtaaagactc ... tttttaacagGTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
EST: gi|125053925|gb|EL124845.1|EL124845
EST:     AATTCTCCCAGTGTTGTTGCCATCAAT                         GTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
genomic: AATTCTCCCAGTGTTGTTGCCATCAATgtaaagactc ... tttttaacagGTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
EST: gi|124907665|gb|EH981745.1|EH981745
EST:     TTCTCCCAGTGTTGTTGCCATCAAT                         GTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
genomic: TTCTCCCAGTGTTGTTGCCATCAATgtaaagactc ... tttttaacagGTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCCTCGTGTTCTTGAC
EST: gi|124706004|gb|EH797406.1|EH797406
EST:     CTTGCATGCCTATTGACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAAT                         GTTAGTCCGATAGAGTATGGCCATGTGCTGCT
genomic: CTTGCATGCCTATTGACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATgtaaagactc ... tttttaacagGTTAGTCCGATAGAGTATGGCCATGTGCTGCT