1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGATCCTATAAACGAGCCATTTGATCCAAACAGACATAACGCAGTGTTCCAAGTCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAGgtaaatatataaagcttgctcaattctttgtctctttatttcatattgtatagtcttaaataccaattagtaatgatgggtgtcaatatgtgcag
species | Arabidopsis thaliana |
transcript | AT4G26780.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGTCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAG TCTGGATACACGCTGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTTEST: gi|19799035|gb|AU230325.1|AU230325
genomic: AAGTCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAGgtaaatatat ... atatgtgcagTCTGGATACACGCTGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTT
EST: AAGTCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAG TCTGGATACACGCTGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTTEST: gi|116478123|gb|EG520715.1|EG520715
genomic: AAGTCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAGgtaaatatat ... atatgtgcagTCTGGATACACGCTGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTT
EST: AAGTCCCTGATGCTTTTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAG TCTGGATACACGCTGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTT
genomic: AAGTCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAGgtaaatatat ... atatgtgcagTCTGGATACACGCTGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATCCTATAAACGAGCCATTTGATCCAAACAGACATAACGCAGTGTTCCAAGTCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAGgtaaatatataaagcttgctcaattctttgtctctttatttcatattgtatagtcttaaataccaattagtaatgatgggtgtcaatatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG