1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCCCACGTGGTGGTGATGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAAgtaaatcttcgacttactaatcactcctagtttactgagcctatatgccttccacttactaatcactcctagttaactgtgccaatatgcttcgtttaaagtcttttagctagttgatgaagagattgtctaacagcgtgttgtatgttggcag
species | Arabidopsis thaliana |
transcript | AT4G25740.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAA GGAGGTGGTGGTAGGCCTGGTTTTG-CCGTGGTGCAGGEST: gi|124891756|gb|EH970658.1|EH970658
genomic: GAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAAgtaaatcttc ... atgttggcagGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGG
EST: CTGATTTCCAGCCGTCTTTCCAA GGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAGTGCAEST: gi|164192833|gb|EL981740.1|EL981740
genomic: CTGATTTCCAGCCGTCTTTCCAAgtaaatcttc ... atgttggcagGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAGTGCA
EST: GTGGTGATGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAA GGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGEST: gi|125242262|gb|EL256347.1|EL256347
genomic: GTGGTGATGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAAgtaaatcttc ... atgttggcagGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCG
EST: TGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAA GGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAG
genomic: TGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAAgtaaatcttc ... atgttggcagGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCACGTGGTGGTGATGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAAgtaaatcttcgacttactaatcactcctagtttactgagcctatatgccttccacttactaatcactcctagttaactgtgccaatatgcttcgtttaaagtcttttagctagttgatgaagagattgtctaacagcgtgttgtatgttggcag
- - - - - - - - - - - GGTGGA
- - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - GCTGAT