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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTACAGGTGTACTCAATCTTGGTGGGGAAGTTGGCTGCATCATTAGTGAAGGTCCCTGGCTATTGGTTGGCATGCCAAATCTTGTTAAGgtaagttcagagtatgattcatttgcatggttccttgactattaaaactcttcatctatactgagaatcacttttgttgtcctatgtgttgaggtttattgttgttacggatatacatttttgaattatatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G25440.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25440.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv16s0100g00320.t01 (Vitis vinifera), 5'ss of exon 4
TGTACAGGTGTACTCAATCTTGGTGGGGAAGTTGGCTGCATCATTAGTGAAGGTCCCTGGCTATTGGTTGGCATGCCAAATCTTGTTAAGgtaagttcagagtatgattcatttgcatggttccttgactattaaaactctt-catctatactgagaatcacttttgttgtcctatgtgttgaggtttattgttgttacggatatacatttttgaattatatgcag
|| || |||||  | ||||||||||| ||||||||||| || |||||||| || || ||| | || || || || |||||| ||||||||||  |||   |     | ||   | | |  | |  | | |||  | ||| |   ||   ||||   | |   || | || | || | | | |    | |                                     
TGCACTGGTGTGGTTAATCTTGGTGGAGAAGTTGGCTGTATGATTAGTGAGGGCCCATGGTTGTTTGTGGGTATACCAAATGTTGTTAAGgtgggtttgaatgcgaaatctccttccttttgctcttattatatatactatagtattattactactatttttttctttttttctttttataggaaataag------------------------------------

upper sequence: AT4G25440.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv16s0022g02530.t01 (Vitis vinifera), 5'ss of exon 3
TGTACAGGTGTACTCAATCTTGGTGGGGAAGTTGGCTGCATCATTAGTGAAGGTCCCTGGCTATTGGTTGGCATGCCAAATCTTGTTAAGgtaagttcagagtatgattcatttgcatggttccttgactattaaaactcttcatctatactgagaatcacttttgttgtcctatgtgttgaggtttattgttgttacggatatacatttttgaattatatgcag
|  || |||||  | ||||||||||| ||||||||||| || |||||||| || || ||| | || || || || |||||| ||||||||||  |||   |     | ||   | | |  | |  | | |||  | ||| |     |||    |  ||   | ||||| |  | | | ||||     |                                     
TCCACTGGTGTGGTTAATCTTGGTGGAGAAGTTGGCTGTATGATTAGTGAGGGCCCATGGTTGTTTGTGGGTATACCAAATGTTGTTAAGgtgggtttgaatgcaaaatctcctcccttttgctcttattatatatactatagtattatcactaccatttttgttgtttttttgttttttgataggaaac-----------------------------------