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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgctacag

Basic information

species Arabidopsis thaliana
transcript AT4G24740.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 5
TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgcta-cag
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |  | |  ||  ||     |||||  |  ||      |  ||     ||  | | ||     | | |||| || ||  | | |    |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacatcattagatt-atggcaattatgaactaaccaaaagagataaccccatgaagcttaaac--attggtgaatttgaatggatggtgggcag

upper sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 5
TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgcta-cag
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | || |  ||  |||    ||||   |  |||        ||  |  ||| | | ||    || | |||| ||  | |  | |  | |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagatt-atgacaattatgcactgacccaaaaatataaccatatggtgcttaaac--gttggtgaatttggattaatggtgagcag

upper sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G179308_T01 (Zea mays), 5'ss of exon 5
TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgcta-cag
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | || |  || |||     |||||  |  |||     |  ||  |  ||| | | ||     | | |||| ||  |    | |  | |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagatt-gtggcaattatgaactgacccaaaaagataaccatgtggtgcttaaac--attggtgaatttggatcaatggtgagcag

upper sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgcta-cag----
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | || |  || |||     |||||  |  |||     |  ||  |  ||| | | ||     | | |||| ||  |    | |  | |||    
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagatt-gtggcaattatgaactgacccaaaaagataaccatgtggtgcttaaac--attggtgaatttggatcaatggtgagcaggtct

upper sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G02740.3 (Glycine max), 5'ss of exon 4
TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgctacag
|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |     ||||||||   || |||| ||||  |||   ||  | |||||| | ||      || |||| ||||| |||||   ||||
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttaat-----ttgtgatgga-atcattt-ccccaatttacaaataatttgggggttaagacaacgg-tgaatttaaa-tggttttaacag

upper sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 4
TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgctacag
|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |     ||||||||   || |||| ||||  |||   ||  | |||||| | ||       | |||| ||||| |||||   ||||
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttaat-----ttgtgatgga-atcattt-ccccaatttacaaataatttgggggttaagacaacag-tgaatttaaa-tggttttaacag

upper sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 4
TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgctacag
|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||  |  |||| ||||||   ||   |||||||  | |   | ||| | |||||| |       || |||| | ||| ||||||| ||||
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttgattgattt-gtgatgg--attgatttccccaatat---acataatgggggttaa-------gggtgaattcaaa-tggttgcaacag

upper sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaa-atagttggggttga-attttgtggatgaacttaaaatggttgctacag
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||  | |  | ||  ||||| || |||||| |||   ||   ||| ||  | |||||| | | |||||||||||| | ||| ||||| | ||||
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaatt-atgatggct-tgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaa-tggtttcaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125321802|gb|EL335887.1|EL335887
EST:     TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATT                         GTATTTGAGAAG
genomic: TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtattt ... gttgctacagGTATTTGAGAAG