1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCCTTGGACAAAATTAGGTTCCTTGCACTCACTGACAAAGACGTTTTGGGTGAAGGTGACACTGCTAAGCTTGAGATCCAGgttagctacatgtttctcaatatgatttttatgcttgagagtgttgaaaatagagtttcatcgatttgttttatcaaatgctgatctcagtaaatttagcctttcgttggaattgtgtctagtgtaagcttttttcttacctccgtaactatgctatggtatgcag
species | Arabidopsis thaliana |
transcript | AT4G24190.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CACTGCTAAGCTTGAGATCCAG ATTAAGCTAGACAAAGCCAAGAAGATTCTTTCTATTCGAGACCGGGGAATTEST: gi|116483054|gb|EG525646.1|EG525646
genomic: CACTGCTAAGCTTGAGATCCAGgttagctaca ... tggtatgcagATTAAGCTAGACAAAGCCAAGAAGATTCTTTCTATTCGAGACCGGGGAATT
EST: CTGACAAAGACGTTTTGGGTGAAGGTGACACTGCTAAGCTTGAGATCCAG ATTAAGCTAGACAAAGCCAAGAAGATTCTTTCTATTCGAGACCGGGGAATTEST: gi|86067432|gb|DR363189.1|DR363189
genomic: CTGACAAAGACGTTTTGGGTGAAGGTGACACTGCTAAGCTTGAGATCCAGgttagctaca ... tggtatgcagATTAAGCTAGACAAAGCCAAGAAGATTCTTTCTATTCGAGACCGGGGAATT
EST: CTGACAAAGACGTTTTGGGTGAAGGTGACACTGCTAAGCTTGAGATCCAG ATTAAGCTAGACAAAGCCAAGAAGATTCTTTCTATTCGAGACCGGGGAATTEST: gi|125039248|gb|EL111517.1|EL111517
genomic: CTGACAAAGACGTTTTGGGTGAAGGTGACACTGCTAAGCTTGAGATCCAGgttagctaca ... tggtatgcagATTAAGCTAGACAAAGCCAAGAAGATTCTTTCTATTCGAGACCGGGGAATT
EST: TGACAAAGACGTTTTTGGGTGAAGGTGACACTGCTAAGCTTGAGATCCAG ATTAAGACTAGACAAAGCCAAGAAGATTCTTTCT
genomic: TGACAAAGACG-TTTTGGGTGAAGGTGACACTGCTAAGCTTGAGATCCAGgttagctaca ... tggtatgcagATTAAG-CTAGACAAAGCCAAGAAGATTCTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTTGGACAAAATTAGGTTCCTTGCACTCACTGACAAAGACGTTTTGGGTGAAGGTGACACTGCTAAGCTTGAGATCCAGgttagctacatgtttctcaatatgatttttatgcttgagagtgttgaaaatagagtttcatcgatttgttttatcaaatgctgatctcagtaaatttagcctttcgttggaattgtgtctagtgtaagcttttttcttacctccgtaactatgctatggtatgcag
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