1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaacttgattttgttagctattatcttcaaatgaagtcttttttttttttggacaacaaaaatgaagtcttttctatagacacagctagtctaga...
species | Arabidopsis thaliana |
transcript | AT4G23470.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTAGGTGTGGAGA-GCCAAATGTCCTCAACTTTGTCTTTGCCACTGAG GTCTTCTGCTGCTTTGGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCEST: gi|124839993|gb|EH924432.1|EH924432
genomic: TGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTT-GCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTG-CAAACTCTGTGGCCTCAACTCGCTTTCTTCTGC
EST: TCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAEST: gi|116434599|gb|EG477191.1|EG477191
genomic: TCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAA
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTTTGCAAEST: gi|125145835|gb|EL181032.1|EL181032
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAA
EST: TGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTEST: gi|86038879|gb|DR334634.1|DR334634
genomic: TGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTT
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAEST: gi|301501098|gb|HO206638.1|HO206638
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAA
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAEST: gi|125141539|gb|EL179040.1|EL179040
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAA
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAEST: gi|86038889|gb|DR334644.1|DR334644
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAA
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCC-CTGAG GTCTTCTGCTGCTTTGCAAACTEST: gi|124988395|gb|EL060784.1|EL060784
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACT
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGEST: gi|86038878|gb|DR334633.1|DR334633
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCG
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAEST: gi|86038880|gb|DR334635.1|DR334635
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAA
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGGCAEST: gi|86038886|gb|DR334641.1|DR334641
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTG-CA
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCEST: gi|86038882|gb|DR334637.1|DR334637
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGC
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAEST: gi|164201371|gb|EL968977.1|EL968977
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAA
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCEST: gi|86038888|gb|DR334643.1|DR334643
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCC
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAEST: gi|301502433|gb|HO207973.1|HO207973
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAA
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAEST: gi|86038877|gb|DR334632.1|DR334632
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAA
EST: TGGTAGGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAEST: gi|116434598|gb|EG477190.1|EG477190
genomic: TGGTAGG-TGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAA
EST: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAEST: gi|125228575|gb|EL242660.1|EL242660
genomic: GTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAA
EST: TGTCTTGCCACTGAG GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTC
genomic: TGTCTTGCCACTGAGgtaagaaact ... tcaatcgcagGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAGgtaagaaacttgattttgttagctattatcttcaaatgaagtcttttttttttttggacaacaaaaatgaagtcttttctatagacacagctagtctaga
- - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - AGAAGC