1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAAGCAGCGCATATGATTTCAAGAGGCCTTCATAACAAGgtacatatatacataccttgaggataataaaatctgtatcttttgttgttggatcagttataagttatgttcttatgcttgcag
species | Arabidopsis thaliana |
transcript | AT4G22740.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCGGGAAGCAGCGCATATGATTTCAAGAGGCCTTCATAACAAG GGCCACACAGTTGCGCGTAAACTTAACTCAGATGGCCGTGTTGATACAACTEST: gi|86077542|gb|DR373299.1|DR373299
genomic: GCGGGAAGCAGCGCATATGATTTCAAGAGGCCTTCATAACAAGgtacatatat ... atgcttgcagGGCCACACAGTTGCGCGTAAACTTAACTCAGATGGCCGTGTTGATACAACT
EST: CTGCAACGCGGGAAGCAGCGCATATGATTTCAAGAGGCCTTCATAACAAG GGTCACACAGTTGCGCGTAAACTTAACTCAGATGGCCGTGTTGATACAACTEST: gi|124742475|gb|EH833637.1|EH833637
genomic: CTGCAACGCGGGAAGCAGCGCATATGATTTCAAGAGGCCTTCATAACAAGgtacatatat ... atgcttgcagGGCCACACAGTTGCGCGTAAACTTAACTCAGATGGCCGTGTTGATACAACT
EST: AAGCAGCGCATATGATTTCAAGAGGCCTTCATAACAAG GGCCACACAGTTGCGCGTAAACTTAACTCAGATGGEST: gi|124733673|gb|EH825075.1|EH825075
genomic: AAGCAGCGCATATGATTTCAAGAGGCCTTCATAACAAGgtacatatat ... atgcttgcagGGCCACACAGTTGCGCGTAAACTTAACTCAGATGG
EST: AAGCAGTCGCATATGATTTCAAGAGGCCTTCATAACAAG GGCCACACAGTTGCGCGTAAACTTAACTCAGATGGEST: gi|125046863|gb|EL119132.1|EL119132
genomic: AAGCAG-CGCATATGATTTCAAGAGGCCTTCATAACAAGgtacatatat ... atgcttgcagGGCCACACAGTTGCGCGTAAACTTAACTCAGATGG
EST: GAGGCCTTCATAACAAG GGCCACACAGTTGCGCGTAAACTTAACTCAGATGGCCGTGTTGATACAACT
genomic: GAGGCCTTCATAACAAGgtacatatat ... atgcttgcagGGCCACACAGTTGCGCGTAAACTTAACTCAGATGGCCGTGTTGATACAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAAGCAGCGCATATGATTTCAAGAGGCCTTCATAACAAGgtacatatatacataccttgaggataataaaatctgtatcttttgttgttggatcagttataagttatgttcttatgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG