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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCAAGCAAAGAACAAGAAGATAGCTGTGTTTCTAGATTATGATGGAACACTTTCTCCAATAGTCGATGACCCTGATCGCGCCATCATGTCTGATGCGgtaaagaactaaaatctctgttttgttagttttgctctctgatctcaaaacgtaaatggctaagtttgttttctatatctctcttag

Basic information

species Arabidopsis thaliana
transcript AT4G22590.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22590.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 2
AGCTCAAGCAAAGAACAAGAAGATAGCTGTGTTTCTAGATTATGATGGAACACTTTCTCCAATAGTCGATGACCCTGATCGCGCCATCATGTCTGATGCGgtaaaga------actaaaatctc--------tgttttgttagttt-----------tgctctctgatctcaaaacgtaaatggctaagtttgttttctatatctctcttag----------------
 |  |  |||| | | |||||||| ||  ||||||||||||||||||| |||||||| |||||||| ||||| ||  || | ||| | ||||||||  | ||||  |      |||  | | ||        | || | ||||||            | ||   | |  ||| |  ||||||  |||  ||   ||| ||| | | |  |                  
TGACCTTGCAATGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCACCAATAGTAGATGATCCGAATTGTGCCTTTATGTCTGAATCTgtaagtaatacatactggattgtcatattatatcttatattagttaaattaagtcaattcttctttagttcatagtgtaaata-ctatcttccatttttatttttgttctttctcaaaacatgtttag

upper sequence: AT4G22590.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 2
AGCTCAAGCAAAGAACAAGAAGATAGCTGTGTTTCTAGATTATGATGGAACACTTTCTCCAATAGTCGATGACCCTGATCGCGCCATCATGTCTGATGCGgtaaagaactaaaatc---------tctgttttgttagttttgctctctgatctcaaaacgtaaatggctaagtttgttttctatatctctcttag
|  | | ||| | | ||||||||||||  ||||||| ||||||||||| || ||||||||||| || ||||| ||||| || ||| | ||||||||||| ||||  || |   |           | |||      |||| |   ||    | || || ||||  | | ||      ||   ||  |   | | ||
AAGTTATGCACAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttactcattagtagtatgtgcaaagagttctttccttccctttccaaccgtatgttgatattgcaattaaataatttgttgtcag

upper sequence: AT4G22590.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv00s0233g00030.t01 (Vitis vinifera), 5'ss of exon 2
AGCTCAAGCAAAGAACAAGAAGATAGCTGTGTTTCTAGATTATGATGGAACACTTTCTCCAATAGTCGATGACCCTGATCGCGCCATCATGTCTGATGCGgtaaagaactaaaatc---------tctgttttgttagttttgctctctgatctcaaaacgtaaatggctaagtttgttttctatatctctcttag
|  | | ||||| | ||||||||||||  ||||||| ||||||||||| || ||||||||||| || ||||| ||||| || ||| | ||||||||||| ||||  || |   |           | |||      |||| |   ||    | || || | ||  | | ||      |    ||  |   | | ||
AAGTTATGCAAAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttactcattagtagtatgtgcaaagagttctttccttccctttccaaccctatgttgatattgcaatcaaataatttgttgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501180|gb|HO206720.1|HO206720
EST:     CACTTTCTCCAATAGTCGATGACCCTGATCGCGCCATCATGTCTGATGCG                         ATGCGTGCTGCTGTGAAAGATGTCGCCAAGTACTTCCCAACAGCAATAATT
genomic: CACTTTCTCCAATAGTCGATGACCCTGATCGCGCCATCATGTCTGATGCGgtaaagaact ... tctctcttagATGCGTGCTGCTGTGAAAGATGTCGCCAAGTACTTCCCAACAGCAATAATT