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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGTTAGTGGTAACAGCATCCATGATACACTTCCATATCAGTTGCCACCGAATCTCACAAGCCTgtaatgctgtgtttgcttagctttgttgttatagtatttactctcagttttcaatttgaaactaacagtttaaagaaaatgtaatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G22130.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G11820.1 (Glycine max), 5'ss of exon 4
GGATGTTAGTGGTAACAGCATCCATGATACACTTCCATATCAGTTGCCACCGAATCTCACAAGCCTgtaatg-----ctgtgtttgc---ttagctttgttgttatagtatttactctcagtt-ttcaatttgaaac-taacagtttaaagaaaatgtaatgcag-----------------------------
 ||  | |||| |||||  |||||||||||| |||| || ||||||||||||||||| || |||||||||||     ||   ||| |    |   ||   |  |  |  |||| | ||  | |  |  ||||||||  | |   |||        ||  |  | |                             
TGACTTAAGTGATAACAAGATCCATGATACAATTCCCTACCAGTTGCCACCGAATCTTACGAGCCTgtaatgtttgcctacatttacacgctcatttcacttcttgatcattttcactttgctactttatttgaaatgttattttttttttctgttgctaaactgtgtcattgcctttcaattgggacaatcag

upper sequence: AT4G22130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G00970.1 (Glycine max), 5'ss of exon 4
GGATGTTAGTGGTAACAGCATCCATGATACACTTCCATATCAGTTGCCACCGAATCTCACAAGCCTgtaatg-----ctgtgtttgcttagctttgttgttatagtatttactctcagttttcaatttgaaactaacagtttaaagaaaatgtaatgcag-------------------------------------
 ||  | |||| |||||  |||||||||||| |||| || |||||||| || ||||| ||||||||||||||     ||    || |       | |  || |  |  | | | ||| ||||| | || |   | | |  ||||  |   | |  ||  |                                     
TGACTTAAGTGATAACAAGATCCATGATACAATTCCCTACCAGTTGCCGCCCAATCTTACAAGCCTgtaatgtttgcctacaattacacgctcatttcattttgttgatcattttcacttttctactttat-ttgaaatgttaattatttttttctgttgctgaactgtgccattgcttttcaattgggacaatcag