1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGgtacctaaaaagaaatttttgatgtgtgttgactgtcttttaaacctgccaacaagctctgagtatatattttgttgccactaatgagcag
species | Arabidopsis thaliana |
transcript | AT4G21790.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAG GCTAGAAGCTTACCTACAGATAAGCTGEST: gi|301502535|gb|HO208075.1|HO208075
genomic: TCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGgtacctaaaa ... taatgagcagGCTAGAAGCTTACCTACAGATAAGCTG
EST: TCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAG GCTAGAAGCTTACCTACAGATAAGCTGCGGAEST: gi|86038987|gb|DR334742.1|DR334742
genomic: TCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGgtacctaaaa ... taatgagcagGCTAGAAGCTTACCTACAGATAAGCTGCGGA
EST: TCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAG GCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCTGTCAACEST: gi|86038988|gb|DR334743.1|DR334743
genomic: TCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGgtacctaaaa ... taatgagcagGCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCTGTCAAC
EST: TCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAG GCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCTGTCAAEST: gi|86038984|gb|DR334739.1|DR334739
genomic: TCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGgtacctaaaa ... taatgagcagGCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCTGTCAA
EST: TCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAG GCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCTEST: gi|86038983|gb|DR334738.1|DR334738
genomic: TCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGgtacctaaaa ... taatgagcagGCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCT
EST: TCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAG GCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCTGTCAACEST: gi|124850384|gb|EH934821.1|EH934821
genomic: TCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGgtacctaaaa ... taatgagcagGCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCTGTCAAC
EST: CATANACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAG GCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCT
genomic: CATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGgtacctaaaa ... taatgagcagGCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGgtacctaaaaagaaatttttgatgtgtgttgactgtcttttaaacctgccaacaagctctgagtatatattttgttgccactaatgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT