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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATACTCGGTTTGGAACCTGGTGCTTCAGATTCAGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGATCCAGgtcgaaatgcttcctggtcctcttccttgataatcgtttatttcctcccttttgatacattgttatgtgttcttagtattgcttatttgtgtattgtaatggtacag

Basic information

species Arabidopsis thaliana
transcript AT4G21180.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21180.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os04g24180.1 (Oryza sativa), 5'ss of exon 4
GGTATACTCGGTTTGGAACCTGGTGCTTCAGATTCAGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGATCCAGgtcgaaatgcttcctggtcctcttccttgataatcgtttatttcctcccttttgatacattgttatgtgttcttagtattgcttatttgtgtattgtaatggtacag
 | || || ||  ||||||| ||||| ||||| || || ||||||||| ||||  | ||||| ||||| ||||||||||||||||||||||||||||| |||  |  |      ||   | | |  |||||||||  |  |         |  || |  | | |  |  || ||| ||||  || ||||| | |   | |    |||
AGCATTCTTGGACTGGAACCAGGTGCATCAGAGTCTGATATCAAGAAATCATACCGTAGACTTTCTATCCAATACCATCCTGATAAAAATCCTGATCCTGgtaaagtt------tgtctcacatttttgataatcaatggtgctaaa---taagaaatgtagctgggc-ttattattattatttttttgttt-tgaaactttcccag

upper sequence: AT4G21180.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 3
GGTATACTCGGTTTGGAACCTGGTGCTTCAGATTCAGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGATCCAGgtcgaaatgcttcctggtcctcttccttgataatcgtttatt--tcctcccttttgatacattgttatgtgtt-cttagtattgcttatttgtgtattgtaatg-gtacag------
 |||| || ||  ||||| |||| || || || || || ||||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||  |  |  ||  |    ||        |||||   |||||  |  | |    |||   |    ||| | || | | ||      |  ||  |  || |       |||       
AGTATTCTTGGACTGGAAGCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgt--acctcatttgtaacact--------ataataaattattaatgttgctcaatgaagaaaaaatatatcttacctggtgaactcttcttacgccttttctcccacacatacccag

upper sequence: AT4G21180.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G167868_T01 (Zea mays), 5'ss of exon 3
GGTATACTCGGTTTGGAACCTGGTGCTTCAGATTCAGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGATCCAGgtcgaaatgcttcctggtcctcttccttgataatcgtttatttcctcccttttgatacattgttatgtgttcttagtattgcttatttgtgtattgtaatggtacag
 |||| || ||  ||||| |||| || || || || || ||||||||| ||||||| || || |||||||| ||||||||||||||||||||||||||||||       | || |     | |  | | |||||  ||   |||          | |   | |  |   |  | |  | |  | |||| | |   |       ||||
AGTATTCTTGGACTGGAATCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGGCTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgt------acctctt----ttgtaacattataataattctgttcaatgaagaaaaaaatatatcttacctggtgaacacttatgatttctctcccgc--ctacacag

upper sequence: AT4G21180.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G20400.1 (Glycine max), 5'ss of exon 4
GGTATACTCGGTTTGGAACCTGGTGCTTCAGATTCAGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGATCCAGgtcgaaatgcttcctggtcctcttccttgataatcgtt-tatttcctcccttttgatacattgttatgtg---ttcttagtattgcttatttgtgtattgtaatggtacag------------
  ||| || || || || ||||| ||  | || || ||||| ||||||   ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||| |||  |  |    ||  | |   ||  | || |||  | | |     ||    |     |  ||||    ||| ||  ||||| ||| |   |  | || |   |               
AATATTCTAGGATTAGAGCCTGGAGCGGCTGAGTCTGAAATAAAGAAAAAGTATAGGAGACTTTCTATTCAATACCATCCAGATAAAAATCCGGATCCAGgttgaag-gtgtttcagttgtttagttttcttattgttgcaatgcaaattttgatgtttgcaggaatgtcggcttcctacaattgcctatgtaactgatatattttcattccttttattttag

upper sequence: AT4G21180.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G08830.1 (Glycine max), 5'ss of exon 4
GGTATACTCGGTTTGGAACCTGGTGCTTCAGATTCAGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGATCCAGgtcgaaatgcttcctggtcctcttccttgataatcgtt-tatttcctcccttttgatacattgttatgt---gttcttagtattgcttatttgtgtattgtaatggtacag--------------------
  ||| || || || || ||||| ||  |||| || ||||| ||||||   |||||  |||| ||||||||||||||||| |||||||| || ||||||||| |||    || | | |  |  |  ||  | || |||  | | |   | ||    |     |  ||||    ||| ||  ||||| ||| |   |  |  | || || |                     
AATATTCTAGGATTAGAGCCTGGAGCGGCAGAGTCTGAAATAAAGAAAAAGTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtgtttcagttgtttatttttttttattgttgcaatgcaaactttgatgtttgcaggaatgttggattcctacaattgcctatgtaactgcta-actgatatatttttattccttttattttag

upper sequence: AT4G21180.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G08830.2 (Glycine max), 5'ss of exon 4
GGTATACTCGGTTTGGAACCTGGTGCTTCAGATTCAGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGATCCAGgtcgaaatgcttcctggtcctcttccttgataatcgtt-tatttcctcccttttgatacattgttatgt---gttcttagtattgcttatttgtgtattgtaatggtacag
  ||| || || || || ||||| ||  |||| || ||||| ||||||   |||||  |||| ||||||||||||||||| |||||||| || ||||||||| |||    || | | |  |  |  ||  | || |||  | | |   | ||    |     |  ||||    ||| ||  ||||| ||| |   |  |            
AATATTCTAGGATTAGAGCCTGGAGCGGCAGAGTCTGAAATAAAGAAAAAGTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtgtttcagttgtttatttttttttattgttgcaatgcaaactttgatgtttgcaggaatgttggattcctacaattgcctatgtaactgcta-----------

upper sequence: AT4G21180.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv16s0050g01460.t01 (Vitis vinifera), 5'ss of exon 3
GGTATACTCGGTTTGGAACCTGGTGCTTCAGATTCAGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGATCCAGgtcgaaatgcttcctggtcctcttccttgataatcgtttatttcctcccttttgatacatt--gttatgtgttcttagtattgcttatttgtgtattgtaatggtacag-----------------------------------------
 | || || || || ||| |||| ||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||| ||  |     || || || |   || |||   |||  ||   |    ||||||  |    ||  || || |||  | |   | || ||||| |  ||    |                                             
AGCATTCTTGGATTAGAATCTGGAGCTTCAGATTCAGAAATAAAGAAGGCATACAGGAGACTCTCGATTCAATACCATCCTGATAAAAATCCGGATCCAGgttgaggt----tctagttct-tcagttaatatgtgttccttagttttactttgatttagcaagtactgcgt-cttcttttgaatcatctgtgtttactatcaatttctttttgcatttatttatttatctttttttttttgttttccag