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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGCCTCTGCAAATTCAATTTACGAGGCGTTTATTCCTGAAGGTAGCTCTAAGCCTGGACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGgtaggttacaaaaacccgataagatagtgtatataccttcattaatagtttggtgaaatattcatctcaaatctttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT4G21160.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21160.4 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 5
GAAATGCCTCTGCAAATTCAATTTACGAGGCGTTTATTCCTGAAGGTAGCTCTAAGCCTGGACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGgtaggttacaaaaacccgataagatagtgtatat--accttcattaatagtt-----------tggtgaaatattcatctca--aatctttgtttcag--
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GAAATTCTTCTGCTAATTCAATTTATGAGGCTTTTATTCCTGAAGGAGTCACAAAGCCTAAACCTAATTCCAGCCATGAGGAGCGAATGAGATTCATCAGgttagatgaaagaaaattgtttcaccataaatctggatctttatgcatggttgtaactctatatagagacacatgtatttatgcactctttgcttgacgt