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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACACATTATATGTGGTGGTTGTAGAACAATGCTTATGTATACGCGTGGGGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAGgtatattaataatatcgtgacatccatatcaatccttttaaagaccatgtattatattgctttataaggtcttttagtcctttagaatcttctttcacac...

Basic information

species Arabidopsis thaliana
transcript AT4G20380.6
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080465|gb|DR376222.1|DR376222
EST:     GGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAG                         CGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
genomic: GGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAGgtatattaat ... aaatcgacagCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
EST: gi|301502089|gb|HO207629.1|HO207629
EST:     GGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAG                         CGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
genomic: GGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAGgtatattaat ... aaatcgacagCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
EST: gi|47830281|gb|CK119965.1|CK119965
EST:     GGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAG                         CGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
genomic: GGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAGgtatattaat ... aaatcgacagCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
EST: gi|164082619|gb|ES212646.1|ES212646
EST:     GCTAGTAGCGTAAGATGCTCTTGACTGTCAAACTACGAACCTTGTGCCAG                         CGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGG
genomic: GCTAGTAGCGTAAGATGCTCTTG-CTGTCAAACTACGAACCTTGTGCCAGgtatattaat ... aaatcgacagCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGG
EST: gi|163979936|gb|ES046045.1|ES046045
EST:     GTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAG                         CGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
genomic: GTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAGgtatattaat ... aaatcgacagCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACACATTATATGTGGTGGTTGTAGAACAATGCTTATGTATACGCGTGGGGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAGgtatattaataatatcgtgacatccatatcaatccttttaaagaccatgtattatattgctttataaggtcttttagtcctttagaatcttctttcacac

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