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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGATAACCATTAGACAGAAGCACCCTTGGATGTTTTTCCCTGATATTGTACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAGgtagtaacacatttgtgctatttcgatatcatcaactcgaaagttcttatctttctcaaagtcctttcacatttgtgcttacag

Basic information

species Arabidopsis thaliana
transcript AT4G20130.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G20130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S134_54V6.1 (Physcomitrella patens), 5'ss of exon 3
GATGATAACCATTAGACAGAAGCACCCTTGGATGTTTTTCCCTGATATTGTACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAGgtag-taacacatttgtgctatttcgat-atcatcaactcgaaagttcttatctttctcaaagtcctttcacatttgtgcttacag------------------
 ||| | ||   |||  |  | |  ||||||||||| || || || || |||||||| |||||||| |||||||| || || ||||| ||||| || ||||| | | | |||      |  | |  || || |||    | ||| ||    | ||    |   || |   |  | |||  ||  |                   
TATGGTGACATGTAGGAAAGATCTGCCTTGGATGTTCTTTCCCGACATCGTACCAATGGGTCATCCAATTTTCGAAATTATCAACTCCACTGACCCAGAGgttgatgagaca----caccgtattaatcattatcgtaccaaaaattgcagttttaagtactctcatcagatttgtgtagttctaaaccacgagctgaatttgt

upper sequence: AT4G20130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ04899 (Selaginella moellendorffii), 5'ss of exon 2
GATGATAACCATTAGACAGAAGCACCCTTGGATGTTTTTCCCTGATATTGTACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAGgtagtaacacatttgtgctatttcgatatcatcaactcgaaagttcttatctttctcaaagtcctttcacatttgtgcttacag
  |  | ||| | ||    || | |||||||||||| ||||| |||||||||||||| ||||| ||  | || ||| | || |||||||||||||| |||||   |   |    | | ||   || | ||        || |||| || || |||                             
ACTTGTCACCGTGAGCAGCAATCTCCCTTGGATGTTCTTCCCGGATATTGTACCAATCGGTCACCCAGTGTTTGATGTTATCAACTCGACTGATCCCGAGgtg--agtgccagggagttaca-cggtctctgtggactgagagttttt-tcattccag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876170|gb|AU237001.1|AU237001
EST:     TACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAG                         ATTGATTGGGATATCAGATTANCGNGTCTTCTGTTATTCTCTTTTGATCGA
genomic: TACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAGgtagtaacac ... gtgcttacagATTGATTGGGATATCAGATTAGCGTGTCTTCTGTTATTCTCTTTTGATCGA
EST: gi|86035259|gb|DR331012.1|DR331012
EST:     TACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAG                         ATTGATTGGGATATCAGATTAGCGTGTCTTCTGTTATTCTCTTTTGATCGA
genomic: TACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAGgtagtaacac ... gtgcttacagATTGATTGGGATATCAGATTAGCGTGTCTTCTGTTATTCTCTTTTGATCGA