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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGgtgagtatatattctttgcacatggcgttgtgaatacttatatacatgggcctactgtttgttgttcgagccagtctgctgctatctttgtttgcatgta...

Basic information

species Arabidopsis thaliana
transcript AT4G19600.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877520|gb|AU238351.1|AU238351
EST:     TCTGTCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGG                         ACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCT
genomic: TCTGTCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGgtgagtatat ... cctcacccagACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCT
EST: gi|116422455|gb|EG465047.1|EG465047
EST:     TCTGTCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGG                         ACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCT
genomic: TCTGTCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGgtgagtatat ... cctcacccagACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCT
EST: gi|164205023|gb|ES173153.1|ES173153
EST:     ATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGG                         ACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCT
genomic: ATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGgtgagtatat ... cctcacccagACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCT