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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCTCTGGTTTTCTCGATCTTGGATTTGAGCAATGGCACATTGGAGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGgtaaatctcttcattgtttttgtttcttatggttaggtttagaccaacgcataaactgcagcctactaacctctgtgcatgtgtcttttaatgtggatataatggaaactctccag

Basic information

species Arabidopsis thaliana
transcript AT4G19185.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G19185.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G09520.1 (Glycine max), 5'ss of exon 4
AGTCTCTGGTTTTCTCGATCTTGGATTTGAGCAATGGCACATTGGAGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGgtaaatctcttcattgtttttgtttcttatggtta--ggtttagaccaacgcataaactgcagcctactaacctctgtgcatgtgtc-ttttaatgtggatataatggaaactctccag
| |   ||| || |   | ||||| |||||  | |  ||  |||||||||| |||||||| || |||||||| || |||||| | ||||| ||||||||||||  | ||||  |    | ||  |    ||  ||    |||||         | |  |   ||||  || ||  |    |||      ||  |||||                     
AATTGGTGGCTTACAGAACCTTGGGTTTGACAATTTTCATCTTGGAGTTTTGTGCTTGATAGGGAACTGCATTTGCATGGCTGCATTTCTAGCCATTCAGgtatgtatctttttgtcatatgcattaagtgactacccatttagtgatcaatgtcacattttgcctgttacccatttactatggccaacttctatgtgcc-------------------

upper sequence: AT4G19185.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G09540.1 (Glycine max), 5'ss of exon 4
AGTCTCTGGTTTTCTCGATCTTGGATTTGAGCAATGGCACATTGGAGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGgtaaatctcttcattgtttttgtttcttatggttaggtttagaccaacgcataa-actgcagcctactaacctctgtgcatgtgtcttttaatgtggatataatggaaactctccag
| ||  |||||| || ||||||||||||||  | |  ||  |||| ||| | | |||||| || |||||||| ||||||||| ||||||| ||||||||||||  |||  ||    ||||||||   |    | |||   | |   |    ||  |||||  ||| |||    |  |  |     ||  |  | |  || || |             
AATCAATGGTTTACTTGATCTTGGATTTGACAATTTTCAGCTTGGGGTTATTTTCTTGATAGGGAACTGCATCTGTATGGCTGCTTTTCTAGCCATTCAGgta--tctactctacatttttgttatgttcattaagggaaaaagtgatctgtatcactgcttcct-ctattacccatttactaagctcctgct-tctatgtatt-------------

upper sequence: AT4G19185.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G08380.1 (Glycine max), 5'ss of exon 4
AGTCTCTGGTTTTCTCGATCTTGGATTTGAGCAATGGCACATTGGAGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGgtaaatctcttcattgtttttgtttc--ttatggttaggtttagaccaacgcataaactgcagcctactaacctctgtgcatgtgtcttttaatgtggatataatggaaactctccag
| |   |||||| |  ||||||||||| || || |  ||  | || ||||| ||||| || || |||||||||||||||||| |||||||  ||||||||||  || ||||  ||| | || ||    |||| |||   |  || |    |||| ||    |   |  |    |         | |||| |  | |   | |                
AATTAGTGGTTTACAGGATCTTGGATTAGACCATTTTCATCTCGGGGTTTTGTGCTTCATAGGGAACTGCATGTGTATGGCTGCTTTTCTATCCATTCAGgttcatatcttttttgatattcttcaaattattgttgattacaggca---gcattaagaaaaaaatggttgttttaactgtcatttcttatcttttacttgtc---------------

upper sequence: AT4G19185.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G21200.1 (Glycine max), 5'ss of exon 5
AGTCTCTGGTTTTCTCGATCTTGGATTTGAGCAATGGCACATTGGAGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGgtaaatctcttcattgtttttgtttctt-atggttaggtttagaccaacgcataaactgcagcctactaacctctgtgcatgtgtcttttaatgtggatataatggaaactctccag
| |   |||||| |  ||||||||||| || || |  ||  |||| ||||| ||||| || || ||||||||||| |||||| |||||||  ||||||||||  || ||||  |  | ||  |    | || |||   |  ||        |  ||    |   || ||    |||| ||| | |  | |    |   | |                
AATTAGTGGTTTACAGGATCTTGGATTAGACCATTTTCATCTTGGGGTTTTGTGCTTCATAGGGAACTGCATGTGCATGGCTGCTTTTCTATCCATTCAGgttcatatctttttgatattcctcaaatgattgttgaatacaggaagcattaggaaaaaaatggtagtattaactgt-catttcttatctctattacttgt----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125244431|gb|EL258516.1|EL258516
EST:     GTATGGCTACTTTTCTTGCCATTCAG                         GCGCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCA
genomic: GTATGGCTACTTTTCTTGCCATTCAGgtaaatctct ... aactctccagGCGCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCA
EST: gi|86080009|gb|DR375766.1|DR375766
EST:     GAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAG                         GCGCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCA
genomic: GAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGgtaaatctct ... aactctccagGCGCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCA