1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGAGCATTGGAAAACAATGGAAGGAGTTTCTCGATTACAACAACAGCATAGGTTTCATCATCCATgtaagaagaaagcttctcataattctaattcaaaagtcttcattttcttcagatctctcattgtttggtttggtttctttttttttcag
species | Arabidopsis thaliana |
transcript | AT4G18040.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATGGAAGGAGTTTCTCGATTACAACAACAGCATAGGTTTCATCATCCAT GAGGATGCGAAGAAGCTCGACAGGAATGCAAAGAACGCTTACACCGCTTGAEST: gi|116465998|gb|EG508590.1|EG508590
genomic: AATGGAAGGAGTTTCTCGATTACAACAACAGCATAGGTTTCATCATCCATgtaagaagaa ... tttttttcagGAGGATGCGAAGAAGCTCGACAGGAATGCAAAGAACGCTTACACCGCTTGA
EST: AATGGAAGGAGTTTCTCGATTACAACAACAGCATAGGTTTCATCATCCAT GAGGATGCGAAGAAGCTCGACAGGAATGCAAAGAACGCTTACACCGCTTGAEST: gi|86078198|gb|DR373955.1|DR373955
genomic: AATGGAAGGAGTTTCTCGATTACAACAACAGCATAGGTTTCATCATCCATgtaagaagaa ... tttttttcagGAGGATGCGAAGAAGCTCGACAGGAATGCAAAGAACGCTTACACCGCTTGA
EST: AATGGAAGGAGTTTCTCGATTACAACAACAGCATAGGTTTCATCATCCAT GAGGATGCGAAGAAGCTCGACAGGAATGCAAAGAACGCTTACACCGCTTGA
genomic: AATGGAAGGAGTTTCTCGATTACAACAACAGCATAGGTTTCATCATCCATgtaagaagaa ... tttttttcagGAGGATGCGAAGAAGCTCGACAGGAATGCAAAGAACGCTTACACCGCTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGCATTGGAAAACAATGGAAGGAGTTTCTCGATTACAACAACAGCATAGGTTTCATCATCCATgtaagaagaaagcttctcataattctaattcaaaagtcttcattttcttcagatctctcattgtttggtttggtttctttttttttcag
- - - - - - - - - TGGAAG
- - - - - - - - - - AAGGAG