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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGAAAACACCGATATGGCGTTACACTATGGTACTATGTTTAGAGAGTGCATCCGTCATCAGATTGTTGCAAAgtgagcaaatcttatattttctttgattacgagattaaatcctatatgtttcaatccataaagagacaatctctatcgaatttatatagtgaaaactgcttctctttctatggttcag

Basic information

species Arabidopsis thaliana
transcript AT4G17270.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17270.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA17G01180.1 (Glycine max), 5'ss of exon 3
GTTTGAAAACACCGATATGGCGTTACACTATGGTACTATGTTTAGAGAGTGCATCCGTCATCAGATTGTTGCAAAgtgagca--aatcttatattttctttgattacgagattaaatcctatatgtttcaatccataaagagacaatctctatcgaatttatatagtgaaaactgcttctctttctatggttcag
 | ||||||||| || ||||| |||||||| ||| | ||||| || ||||||||  | || |||||||||||||||| ||    ||      | |   ||  |||  | | ||   || | ||  ||  |||  | |           ||  || |  ||  |  ||| ||||    ||  |||           
ATATGAAAACACAGACATGGCTTTACACTACGGTGCAATGTTGAGGGAGTGCATAAGACACCAGATTGTTGCAAAgtaagggggaacgaccaaatcaattcaattttgtgtttttctcttttaatttcaaatttaaa-----------tcagtcaatgttgaaaggtggaaacgcaatcattttgg---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125097354|gb|EL153842.1|EL153842
EST:     CACTATGGTACTATGTTTAGAGAGTGCATCCGTCATCAGATTGTTGCAAA                         ATATGTTTTGGACTCGGAGCACGTGAAGAAGTTT
genomic: CACTATGGTACTATGTTTAGAGAGTGCATCCGTCATCAGATTGTTGCAAAgtgagcaaat ... tatggttcagATATGTTTTGGACTCGGAGCACGTGAAGAAGTTT
EST: gi|116482972|gb|EG525564.1|EG525564
EST:     GCGAGGAAAGATGCTACACAAGTTGTTGCAAATCTTCAGAGGCAACAAGTCAATTCACGTCTTATTGCTGCTGATTATCTTGAATCCAACATTGATCTTATGGATTTT
genomic: GCGAGGAAAGATGCTACACAAGTTGTTGCAAATCTTCAGAGGCAACAAGTCAATTCACGTCTTATTGCTGCTGATTATCTTGAATCCAACATTGATCTTATGGATTTT
EST: gi|164020801|gb|ES108571.1|ES108571
EST:     CACTATGGTACTATGTTTAGAGAGTGCATCCGTCATCAGATTGTTGCAAA                         ATATGTTTTGGACTCGGAGCACGTGAAGAAGTTTTT
genomic: CACTATGGTACTATGTTTAGAGAGTGCATCCGTCATCAGATTGTTGCAAAgtgagcaaat ... tatggttcagATATGTTTTGGACTCGGAGCACGTGAAGAAGTTTTT
EST: gi|86070913|gb|DR366670.1|DR366670
EST:     GCGAGGAAAGATGCTACACAAGTTGTTGCAAATCTTCAGAGGCAACAAGTCAATTCACGTCTTATTGCTGCTGATTATCTTGAATCCAACATTGATCTTATGGATTTT
genomic: GCGAGGAAAGATGCTACACAAGTTGTTGCAAATCTTCAGAGGCAACAAGTCAATTCACGTCTTATTGCTGCTGATTATCTTGAATCCAACATTGATCTTATGGATTTT