1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGAAGAGCTTTTTCGAAGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaacttcttttactggcggctttactcgtaaacttaaaatttcgatatagtagtcatgttttattttcttgggaaaaag
species | Arabidopsis thaliana |
transcript | AT4G14716.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTG GTTACTTTGATGTGAGAGATCGTACTGAAGCTTGGATTANGGTATTGGTTAEST: gi|116403060|gb|EG445652.1|EG445652
genomic: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAA
EST: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTG GTTACTTTGATGTGAGAGATCGAAATGAAGCTTGGATTAGGGTATTGGTAAEST: gi|19874934|gb|AU235765.1|AU235765
genomic: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAA
EST: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTG GTTACTTTGATGTGAGAGATCGTAATGAAGCNTTGGATTANGGTNTTGGTEST: gi|124794677|gb|EH884356.1|EH884356
genomic: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGATGTGAGAGATCGTAATGAAGC-TTGGATTAGGGTATTGGT
EST: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTG GTTACTTTGATEST: gi|116403021|gb|EG445613.1|EG445613
genomic: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGAT
EST: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTG GTTACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAAEST: gi|125040367|gb|EL112636.1|EL112636
genomic: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAA
EST: CTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTG GTTACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAAEST: gi|124759329|gb|EH849459.1|EH849459
genomic: CTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAA
EST: TACACACTGATGAGGAGATCCGTTACNGCGTTGCAGGAACTG GTTACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAAEST: gi|125041711|gb|EL113980.1|EL113980
genomic: TACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAA
EST: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTG GTTACTTTGATGTGAGAGATCGTAATGAAGEST: gi|124717617|gb|EH809019.1|EH809019
genomic: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGATGTGAGAGATCGTAATGAAG
EST: GAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTG GTTACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAAEST: gi|124909352|gb|EH983432.1|EH983432
genomic: GAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAA
EST: GTTACTGCGTTGCAGGAACTG GTTACTTTGATTTGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTEST: gi|124934976|gb|EL011999.1|EL011999
genomic: GTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGA--TGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGT
EST: AACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTG GTTACTTTGATGTGAGAGATACGTAATGAAGCTTGGATTAGGGTATTGGTAEST: gi|124977878|gb|EL051152.1|EL051152
genomic: AACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGATGTGAGAGAT-CGTAATGAAGCTTGGATTAGGGTATTGGTA
EST: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTG GTTACTTTGATGTGAGAGATCGTAATGAEST: gi|125274269|gb|EL288354.1|EL288354
genomic: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGATGTGAGAGATCGTAATGA
EST: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTG GTTACTTTGATGTGAGAGA
genomic: AGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaactt ... tgggaaaaagGTTACTTTGATGTGAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGAAGAGCTTTTTCGAAGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGgtaagaacttcttttactggcggctttactcgtaaacttaaaatttcgatatagtagtcatgttttattttcttgggaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC