1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACAAAAAGGATGTTTCAGCTTTTGTTGTCTGCCTACTCCACAATTACCATCCATGATTTAGCTCTTTTCCTAGGGATGACGGAGGATGATGCCACAACTTgtaagcttctttctgcaatttcctttgcttacaaaagattaagtacctcatttcacatttctattgaattctactgaattgattcttatattgatacttt...
species | Arabidopsis thaliana |
transcript | AT4G14110.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAGGATGATGCCACAACTT ATGTTGTAGAGAATGGATGGACAGTGGATGCAGCTTCTCAAATGGCGAGTGEST: gi|125228544|gb|EL242629.1|EL242629
genomic: GGAGGATGATGCCACAACTTgtaagcttct ... atatacacagATGTTGTAGAGAATGGATGGACAGTGGATGCAGCTTCTCAAATGGCGAGTG
EST: TGATTTAGCTCTTTTCCTAGGGATGACGGAGGATGATGCCACAACTT ATGTTGTAGAGAATGGATGGACAGTGGEST: gi|19878569|gb|AU239400.1|AU239400
genomic: TGATTTAGCTCTTTTCCTAGGGATGACGGAGGATGATGCCACAACTTgtaagcttct ... atatacacagATGTTGTAGAGAATGGATGGACAGTGG
EST: ATGATTTAGCTCTTTTCCTAGGGATGACNGGAGGATGATGCCACAACNTT ATGTTGTAGAGAATGGATGGACAGTGGATGCAGCTTCTCAAATGGCGAGTEST: gi|19799415|gb|AU230705.1|AU230705
genomic: ATGATTTAGCTCTTTTCCTAGGGATGAC-GGAGGATGATGCCACAAC-TTgtaagcttct ... atatacacagATGTTGTAGAGAATGGATGGACAGTGGATGCAGCTTCTCAAATGGCGAGT
EST: CCATGATTTAGCTCTTTTCCTAGGGATGACGGAGGATGATGCCACAACTT ATGTTGTAGAGAATGGATGGACAGTGGATGCAGCTTCTCAAATGGCGAGTG
genomic: CCATGATTTAGCTCTTTTCCTAGGGATGACGGAGGATGATGCCACAACTTgtaagcttct ... atatacacagATGTTGTAGAGAATGGATGGACAGTGGATGCAGCTTCTCAAATGGCGAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAAAAGGATGTTTCAGCTTTTGTTGTCTGCCTACTCCACAATTACCATCCATGATTTAGCTCTTTTCCTAGGGATGACGGAGGATGATGCCACAACTTgtaagcttctttctgcaatttcctttgcttacaaaagattaagtacctcatttcacatttctattgaattctactgaattgattcttatattgatacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaagat